Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1219 ATGCAAAACCCTGACAAAGATTGTAGAACCAGCACTAAATCTGATCCTCCCTCTCACCCTGATCAACCCCCTCCTCCTCCTACTACTACTGGTCCCACTCAAACTGTCGCCGGTGATGTCACCGCCACTGAAGAAGGAGGAATTGGCGCGGGAGGTGTCGCCAGCTCCGACGCAAGGATAGTCCAGGTGGTGGACCCACCAGCTGGGGGTGAAGGTGGGTCCTCTGCGGCGGAGGTGAGGGTGGAGGGTGGAGTGTTGGTGGTGGAAGGTGGGTCGTCGGTGGCTCCAACGCCGCCGGAGAAACAGGGTAAGCAGAAGCGGAAGTCGGCTCAACTGTCAGATCCTCCACCTTGGCCACCGAAATGCAACGAGTGCGGGAAAGAGTTCCCCAGTTGGAAAGCAGCGTTTGGACATATGAGGGCACACCCTGATCGCGAATATCGAGGTTTCTTCAAACCTCCTACTTCTTCTTCATCATCATCACCGAGGCAACGCGTTCGTCTAGTTGCAGATGAGAATATTAATACAGGTGTGGAACAACGTGGAGGGGAGAAGGGAACATCATCGGCTACCGGAGGAGTTGGGCTTGATCTGAATCAGCCGACGATGGAGGAAATGGAGTCTTCTAATTCTCAGGCTGCACGGAGAAACGAAGCACTCGACTCTTCTTCCTCGGCTGCAGAAAAGAAGGTCGGGTTTGACCTAAACGAACCTCCTCCTTCTGAAGATGATAATGATCAACACAAGCCTTAA 753 0.5392 MQNPDKDCRTSTKSDPPSHPDQPPPPPTTTGPTQTVAGDVTATEEGGIGAGGVASSDARIVQVVDPPAGGEGGSSAAEVRVEGGVLVVEGGSSVAPTPPEKQGKQKRKSAQLSDPPPWPPKCNECGKEFPSWKAAFGHMRAHPDREYRGFFKPPTSSSSSSPRQRVRLVADENINTGVEQRGGEKGTSSATGGVGLDLNQPTMEEMESSNSQAARRNEALDSSSSAAEKKVGFDLNEPPPSEDDNDQHKP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1219 250 MobiDBLite consensus disorder prediction 145 250 - -
Lele54g1219 250 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Lele54g1219 250 MobiDBLite consensus disorder prediction 235 250 - -
Lele54g1219 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Lele54g1219 250 Pfam C2H2-type zinc finger 121 144 - -
Lele54g1219 250 MobiDBLite consensus disorder prediction 152 166 - -
Lele54g1219 250 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 159 - -
Lele54g1219 250 MobiDBLite consensus disorder prediction 17 31 - -
Lele54g1219 250 MobiDBLite consensus disorder prediction 1 122 - -
Lele54g1219 250 MobiDBLite consensus disorder prediction 180 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1219 Lele-ChrLele54 17706268 17707237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1219 122 166 C2H2 Transcription Factor Family AT4G35280 48.000 1.14e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele54g1219 zf-C2H2_6 9.5e-06 CL0361