Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1215 ATGGAGCTCGCAAATCACGTTGGTGCCGGCAGCCGCCATAACGCATCAAATCCAAACATAGGATTTGATGATCGAAACAAACAACCACACACGGTGGCTTTTGGTCGGTGTAGCCGAGTTCATTCACTTCTCTATTTCCAATACACAGTGCTTGCTCCCATTTTCTTTCTCTCTTCCTCGGCTTCTTCTTCTTCCTATCCTCCAATTTATGCTAATTCTGTTGACTCAATTAATATGGGTCTCTGCTTCGGTTCTCTCGCTCCCCGTGGTCTCAAGATTGGCTCCAAAAGACCTCACAATTCAGGATCGGCGAGTCCTGTGAGTAGGAATGTCGAGTCATTTACAACAAACAGCACTGTAGATAAGAGCCAATTCTCGATGATTGCAAATGGAAGCGTCGATGGGTCCAATGCTTCTCCAAGTCGGCATGTTATAGTAACGCCGAATTACTTGAAGGTTTTCAGTTTTGGGGATTTGAAAGCAGCCACCAAGAACTTTAAATCGGATTCATTGGTTGGAGAGGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGGATGAGAAGACGCTTTCGCCGGCCAAAGCTGGCTCTGGAATGATGGTCGCTATAAAGAAACTCAACCCTGAGAGTATGCAAGGCTTTCAAGAGTGGCAGTCAGAAGTGAACTTCTTAGGAAGCCTTTCTCACCCAAACCTTGTCAAGCTATTTGGTTACTGTTGGGAGGATGATGAACTTCTCCTTGTGTATGAGTTCATGCCTAAGGGAAGCTTGGAGAGTCATCTCTTCAGAAGGGGTTCTAACACGGAACCGCTTTCTTGGAACACACGACTCAAAATAGCTATTGATGCAGCTAAAGGCCTAGCTTTCTTGCACACTTCAGAAAAGCAAATCATATACAGAGATTTCAAGGCCTCAAATATATTACTTAATGGGAGTTACAATGCAAAAATTTCTGATTTTGGCTTGGCTAAATTAGGGCCTACTGGAGAACAATCACATGTGACCACCAGGATCATGGGCACATATGGTTATGCTGCTCCAGAATACGTAACCACAGGGCACTTGTATGTGAAGAGCGACGTGTACGGGTTTGGTGTAGTGCTGCTTGAAATGCTGACAGGTTTGAGAGCACTCGATCCAAAGAGGCCATCTGGGCAGCAAAATCTGACTGAGTGGGGAAAGCCATGTCTCACCAGCAAAAAGAAGTTGAAAACCATAATGGATGCCAGAATAGAGGGTCAATATTCACTCAGTGCAGCATTTGAAGCAGCTCAGCTCATTCTCAAGTGCCTAGAACCTGACCCCAGAAAACGCCCCGGTATGAAGGATGTAGTGGAGTCATTGCAAGGTATTGAAGCTACCCAAAACAAGTCAAAAGGTTCCAAGAAATCATGCCAATCTTCACCTCTTCATCATCATAAGAAGCCTATTCATCACCGATCAGTTCATGATGGCCATAAAATCGTCAGTCTATGA 1476 0.4472 MELANHVGAGSRHNASNPNIGFDDRNKQPHTVAFGRCSRVHSLLYFQYTVLAPIFFLSSSASSSSYPPIYANSVDSINMGLCFGSLAPRGLKIGSKRPHNSGSASPVSRNVESFTTNSTVDKSQFSMIANGSVDGSNASPSRHVIVTPNYLKVFSFGDLKAATKNFKSDSLVGEGGFGKVYKGWLDEKTLSPAKAGSGMMVAIKKLNPESMQGFQEWQSEVNFLGSLSHPNLVKLFGYCWEDDELLLVYEFMPKGSLESHLFRRGSNTEPLSWNTRLKIAIDAAKGLAFLHTSEKQIIYRDFKASNILLNGSYNAKISDFGLAKLGPTGEQSHVTTRIMGTYGYAAPEYVTTGHLYVKSDVYGFGVVLLEMLTGLRALDPKRPSGQQNLTEWGKPCLTSKKKLKTIMDARIEGQYSLSAAFEAAQLILKCLEPDPRKRPGMKDVVESLQGIEATQNKSKGSKKSCQSSPLHHHKKPIHHRSVHDGHKIVSL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1215 491 MobiDBLite consensus disorder prediction 466 482 - -
Lele54g1215 491 FunFam Serine/threonine-protein kinase BIK1 133 251 - -
Lele54g1215 491 FunFam Serine/threonine-protein kinase PBS1 252 467 - -
Lele54g1215 491 CDD STKc_IRAK 172 451 - -
Lele54g1215 491 MobiDBLite consensus disorder prediction 451 491 - -
Lele54g1215 491 ProSitePatterns Protein kinases ATP-binding region signature. 172 205 IPR017441 GO:0005524
Lele54g1215 491 PANTHER OS01G0588500 PROTEIN-RELATED 120 452 - -
Lele54g1215 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Lele54g1215 491 ProSiteProfiles Protein kinase domain profile. 166 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1215 491 Gene3D Transferase(Phosphotransferase) domain 1 252 482 - -
Lele54g1215 491 MobiDBLite consensus disorder prediction 451 465 - -
Lele54g1215 491 MobiDBLite consensus disorder prediction 1 24 - -
Lele54g1215 491 Gene3D Phosphorylase Kinase; domain 1 150 251 - -
Lele54g1215 491 Pfam Protein tyrosine and serine/threonine kinase 169 448 IPR001245 GO:0004672|GO:0006468
Lele54g1215 491 SUPERFAMILY Protein kinase-like (PK-like) 140 448 IPR011009 -
Lele54g1215 491 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1215 Lele-ChrLele54 17680694 17685184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1215 152 448 Glycoside Hydrolase AT3G07070 49.664 2.68e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele54g1215 PK_Tyr_Ser-Thr 4e-48 CL0016