Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1212 ATGCCCAAAGCGAATAAGACCGACTCCATAGTCGACGATAACCGGTTGAAGCGCAAGGGCGCTGGAGTTGGAAGGAAGCGGTCCAGAAAAGCTGCAAAGGATCCAAACAAGCCCAAGAGGCCTCCGAGCGCTTTCTTTGTGTTTATGTCCGAGTTCAGAGAGCAGTATAAGAAGGAACATCCAGACAATAAATCAGTCACTGTTGTCGGTAAAGCTGGCGGTAATGAATGGAAAGCCATGTCTGATGAGGAGAAAGCTCCCTACGTTGCCAAGGCAGAGAAGAAGAAAGCGGAATACGAGAAAACTATTAAAGCGTACAATATGATATTGGCTGAGGGCAAAAATCCTTCAGACGAAGCAGAGTCTGATAAATCAAAGTCAGAAGTCAATGGCGATGATAACGAAGAGGAGGAGGAAGAGGAGGACGATCTTCAGAATTATGTAGTTCCCATAATCGGCATGATAACGTCCAATGATGGGGCAACGGAATGTGAAGTCTGGCCGCATATGGAGGCAACCTATTTAATTCATGTCCAAAATATATTTTTTGAATTTCTTTGTTTGAGAATGGCCAAATTTCCAATCAGCCATACCAATTATACTTACTTGCATGACCAGAATGATCCTTCTGAAGCAATTGACGTACACCATATAATGGTGAAAAGGAGTGGCGCAAAAGCTCTCTTTGTTTACATCTCAGCACTTGTTCTATTAGCACCTGCCTTCTATCTCTACGCGTATGAGGGGAAGTCGATTACCCTTGTCTATTACAGCTTGCTTTTCAACTTAATATTTGTCAAGATCTTACTTTGGAGGCCTGTTGCGAAAGAGTCTGTTGTGATAATGCCAGCTTTTGGAGTACAGCTTGAGACTCACTACATGAGCGGAAAAGTCACCCGCTACTTTGTTCCCATTGACAAGATTCTGAAACCTGTTTTACTAGAATGTGTGACACCAATGACATGTTACTGGACTCTATCCTTGATTGTACGCGGGGAATCAGAACTAATGTTGATTTTTAAGAATTTGCGTCCCCCAGTGACAATGTTGGTCCATGTCTGGAAGGCCTTGTGTGCTGGAACTGATGGCAAAAGAGGCTTGGACAAAGGCACTGTTCTTGGGCAGCTTCCCAAATCCATTGAGAAGAGGGCTGGTATAAGCGATACTGAAATCCATGACCATGTCTTCAATAATGCTAGCTAG 1203 0.4372 MPKANKTDSIVDDNRLKRKGAGVGRKRSRKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPDNKSVTVVGKAGGNEWKAMSDEEKAPYVAKAEKKKAEYEKTIKAYNMILAEGKNPSDEAESDKSKSEVNGDDNEEEEEEEDDLQNYVVPIIGMITSNDGATECEVWPHMEATYLIHVQNIFFEFLCLRMAKFPISHTNYTYLHDQNDPSEAIDVHHIMVKRSGAKALFVYISALVLLAPAFYLYAYEGKSITLVYYSLLFNLIFVKILLWRPVAKESVVIMPAFGVQLETHYMSGKVTRYFVPIDKILKPVLLECVTPMTCYWTLSLIVRGESELMLIFKNLRPPVTMLVHVWKALCAGTDGKRGLDKGTVLGQLPKSIEKRAGISDTEIHDHVFNNAS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1212 400 Pfam GPI-GlcNAc transferase complex, PIG-H component 278 341 IPR019328 -
Lele54g1212 400 MobiDBLite consensus disorder prediction 20 34 - -
Lele54g1212 400 MobiDBLite consensus disorder prediction 112 143 - -
Lele54g1212 400 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H 192 362 IPR044215 GO:0000506|GO:0006506
Lele54g1212 400 SMART hmgende2 37 108 IPR009071 -
Lele54g1212 400 MobiDBLite consensus disorder prediction 1 19 - -
Lele54g1212 400 CDD HMGB-UBF_HMG-box 38 104 - -
Lele54g1212 400 Gene3D High mobility group box domain 23 123 IPR036910 -
Lele54g1212 400 MobiDBLite consensus disorder prediction 1 43 - -
Lele54g1212 400 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Lele54g1212 400 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Lele54g1212 400 Coils Coil 89 109 - -
Lele54g1212 400 MobiDBLite consensus disorder prediction 116 131 - -
Lele54g1212 400 SUPERFAMILY HMG-box 25 106 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1212 Lele-ChrLele54 17664763 17669620 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele54g1212 HMG_box 8.3e-23 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1212 54 17664763 17669620 Lele54g1212 54 17664763 17669620 ECH
Lele53g1240 53 21040565 21046278 Lele54g1212 54 17664763 17669620 ECH
Lele54g1212 54 17664763 17669620 Lele55g0246 55 1503020 1507771 hybridization
Lele54g1212 54 17664763 17669620 Lele56g0233 56 1874633 1879345 hybridization