Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1206 ATGTCTTGCTCGTCGTCATCAGGGTCCGAGGAAGAGGATGAGGACTTCGATTCCTACAGAAAGGGAGGCTACCACGCCGTGAGGGTTGGCGATCAGTTCGCCAGTGGGAGGTACATAGCACAGAGGAAGCTGGGGTGGGGTCAGTTCTCCACCGTCTGGCTCGCTTACGATACTCGCAATTCTACATATGTTGCTCTCAAAATCCAGAAAAGTGCTGCCCAGTTTGCTGAGGCCGCCCTTCATGAGATAAATGTTCTTTCATCCATTGCTGAGGGCAACCCTTCAAATTCAAAGTGTGTCGTTCAATTGATTGACCACTTCAAGCATTTAGGCCCCAATGGGCAGCACCATTGCATGGTCCTTGAGTTCCTTGGCGATAGCTTGCTTCGTCTGATCAGATATAGACGTTACAAAGGCCTTCCAATGAATAAAGTTAGAGAAATTTGTAAATGCATTTTGATTGGTTTGGATTACTTGCATAGAGAACTTGGTATAATCCACTCGGACCTAAAACCTGAAAATGTCCTTCTCTTGTCTACCATTGATCCTGCGAAAGACCCTGTTAGATCTGGACAAAGCCCAATTCTGGAGAGGCCTGAGGGAAGCTTAAATATTGGATTTTCAAGTGTTATTGAGAAAAAGTTGAAAAGGAGAGCGAGAAGAGCAGTTGCTAAAATATCAGGTAGAACTTCGTCATTGGGAGAAGCTAGAGAGGCTACAAAATCTGATAGAAACATCAATGGAATTGATGTGCAATGCAAGATAGTAGATTTTGGAAATGCATGCTGGGCAGATAAACCATTTGCAGAAGAAATCCAGACGAGGCAGTATAGAGCTCCTGAAGTTATACTGCAGTCTGGGTATTCCTTTTCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTGGCCACAGGTGATATGATGTTTACTCCCAAACCAGGACAAGGTTTTAGTGAGGATGAGGACCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATACCCCGGAAGGTTGCCGTCAGTGGAGCAAAATCCAAGGATTACTTTGATAGACATGGGGATCTAAAAAGAATTAGGAGGCTAAAATTCTGGCCGCTTGACAAATTTTTTATTGATAAATACAAAATTTCAGAGAGAGATGCTCGTGAGTTTTCAGAATTCATTTCCCCACTCCTGGATTTTTCGCCGGAGAAGCGGCCAACTGCACAAAAGTGTTTAGAGCACCCATGGCTTAATGGCCAAGCCAACTCCAAATAA 1263 0.4434 MSCSSSSGSEEEDEDFDSYRKGGYHAVRVGDQFASGRYIAQRKLGWGQFSTVWLAYDTRNSTYVALKIQKSAAQFAEAALHEINVLSSIAEGNPSNSKCVVQLIDHFKHLGPNGQHHCMVLEFLGDSLLRLIRYRRYKGLPMNKVREICKCILIGLDYLHRELGIIHSDLKPENVLLLSTIDPAKDPVRSGQSPILERPEGSLNIGFSSVIEKKLKRRARRAVAKISGRTSSLGEAREATKSDRNINGIDVQCKIVDFGNACWADKPFAEEIQTRQYRAPEVILQSGYSFSVDMWSFACIAFELATGDMMFTPKPGQGFSEDEDHLALMMELLGKIPRKVAVSGAKSKDYFDRHGDLKRIRRLKFWPLDKFFIDKYKISERDAREFSEFISPLLDFSPEKRPTAQKCLEHPWLNGQANSK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1206 420 FunFam Protein kinase superfamily protein 24 123 - -
Lele54g1206 420 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Lele54g1206 420 FunFam Serine/threonine-protein kinase SRPK 115 413 - -
Lele54g1206 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lele54g1206 420 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1206 420 CDD STKc_SRPK 27 413 - -
Lele54g1206 420 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Lele54g1206 420 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1206 420 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Lele54g1206 420 SUPERFAMILY Protein kinase-like (PK-like) 32 416 IPR011009 -
Lele54g1206 420 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1206 420 Pfam Protein kinase domain 251 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1206 420 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1206 Lele-ChrLele54 17638956 17641320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1206 4 414 EF-hand Containing Proteins AT5G22840 53.145 1.27e-169 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele54g1206 Pkinase 5.7e-23 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0023 52 164013 167781 Lele54g1206 54 17638956 17641320 CCT
Lele49g0018 49 116378 124511 Lele54g1206 54 17638956 17641320 CCT
Lele50g0021 50 167248 169542 Lele54g1206 54 17638956 17641320 CCT
Lele51g0020 51 124573 135510 Lele54g1206 54 17638956 17641320 CCT
Lele54g1206 54 17638956 17641320 Lele50g0015 50 135306 139132 CCT
Lele54g1206 54 17638956 17641320 Lele55g0252 55 1530731 1533410 hybridization
Lele54g1206 54 17638956 17641320 Lele56g0904 56 7692298 7720369 hybridization