Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1201 ATGCAACTGTCTCTGAAGTGCCTTGATCAGTTTAATCTTAATTTGTGTGACTATTTGGCTGCTTTGGGTGACATTACCAAGGTGTATGTATGTGGAATAAGCATTGGTAATGTATGGGTTATGAGATGTTCATTATGGTCCAGATTTCAGTCAGAGAATCAAATGGTAGTCTCTAAGGCTGAAAATACTCTTGTGGACTCGAAAAAATCTGATCTACCTGGATATGCTGTTTTAAATACCTCTAGAGGCTCTATAATAATAGACCTTTACAAGGAAACTTCCCCTGAAGTTGTTGATGAATTCATTGACTTGTGCCAAAAGGGGCACTTCAAGGGAATGCATTTCCATCATGTAATCAAGCACTTTGTGATTCAAGCAGGGGAAAACCAAGGGAAAGGACGTACCATCGATTGGAGTGTGAGAGGAAAGCACACTACCAGAGCGTTTTCTCCTCCAGTGGCGGATGGTTCGGCTCCGGGCTTGGCTGTGAGGTTTGGCCGTTTGCAGTCGCATCTTTTATTTCGGTTGATGGCATTTTAG 540 0.4241 MQLSLKCLDQFNLNLCDYLAALGDITKVYVCGISIGNVWVMRCSLWSRFQSENQMVVSKAENTLVDSKKSDLPGYAVLNTSRGSIIIDLYKETSPEVVDEFIDLCQKGHFKGMHFHHVIKHFVIQAGENQGKGRTIDWSVRGKHTTRAFSPPVADGSAPGLAVRFGRLQSHLLFRLMAF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1201 179 SUPERFAMILY Cyclophilin-like 70 135 IPR029000 -
Lele54g1201 179 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 47 147 - -
Lele54g1201 179 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 77 134 IPR002130 GO:0000413|GO:0003755
Lele54g1201 179 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 72 155 IPR002130 GO:0000413|GO:0003755
Lele54g1201 179 Gene3D - 54 163 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1201 Lele-ChrLele54 17605433 17609240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1201 49 134 U-box Gene Family AT5G67530 32.184 1.55e-10 57.4