Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1199 ATGAGTGAAAAAAAGGGAAGTGAATGTGAGTATCGCCATAGTGAGTATGCTCGGGTTAATCCCCGAGACTGTTGGTATTGGTTGAACGGTAATTGCTTGAATCCCAAATGTTCCTTCCGTCATCCGCCTCTTGATAGCCTCTTATCACCACAGGCAGCCACTGCTGGTGGATCATCTGCACCCCCATCACAGAGTGCACTGACTTCTGTACCACATTCACCTTATAATTCCACAAAGCCAGCTGTCCCTTGCATTTTCTTCCAGAAGGGGCTTTGCTTAAAAGGTGAACGATGTGCTTTTTGGCATGGACCAAATCCTAGCACCAGTAATAAAGTTCCTCAGGTTCAGGCAACTAACCAGGTTACTGAGCCTCCAAGTTTTAAGAAGGTTTTTAGTGGCCCAGAGTCAACACAAGAAAGGAAAATTTCCCAAGCAAATGTTGCAAAGCCAGTTGCAGGCACTGAAGCTAAGCCTGCCCAAAATGTTGAAACTGCTTCGCATAGAAATGTAGTTGCCTTAGAGAGGCATGCACCGCCAGCAATGGGATTTGATAATGAGGCGTCTAGATTCAAGGTAGTAAATACTCTGCCAAGCCATGCGTATCAATCTCATGTATCAGATGATCATAGTTTCCACAATGGCAAGGAAAGCGATGAATTCTTGAGAGAATCCTCACCTGGCTTTGATGTACTTGTAGCTGATGAACTGAGGAATTCAGATTACTATGATAGAGAGGACCAATTTGGAAAACCAAGAGGTCAAGATGGGATGAACTTGGACTCTCTGAATGAATATGATTTAGGACATTCTGTAGATTATAAATCTGTAGCAGATATTGACCAAGAAAGATATTGTGGGCCACAAGGTTATGACTTGTACGATCGCATGCAAGAGACGTATGAATGGGATCAGCGCAGGAATTCATCTGAAAGAATATTCCGGGGAACAACCCATTTGGAAAGGATGACTCATCGCAGATCTGGCAGTCCTGAAAATGTTGGGGTTTCAGATCTTCGACATCGTTTATCTAAGCGCAGGAGGGTCAATGGTTTGAAATCTGTTGTGAGTCATGATTATGCGCGTCAGAGCCACGATGATGAGCAAAGTCACCGATTTTCTTCTCAAAAGGATGCTCACCAGTTACCTCTGAATGAAAGCGCTCTCAGTAATCGCTTCCGAGGCAGGATAAAGCTTCCAGCAAATGGTGGTGACGAATATGTGGAGAGGGAATCAGACAGGGAAAGAAATAGAAGCACATTGTCACCTGTAGCTATGCAGGCTCCTCACCCAGGTAGGTTCCGAGATAGATTGAGAGGAAAGGTGCAAGAAGATTTTGAGAGGAAAAACTTCAGGGATCAACCTATAAGGAGAGAAATAAATGGGGACCAAGATGCTGGTTTTGATGGACCAAAAAGTCTTGCTGAACTGCGAAATGGAAAGAATAAGGAGCATCATTTTCTTGGTAAGAGGAAAAGCTTAAAGGAACAACAACAATCTGAGGATGATTTCATGTTTGAAGGTCCAAAACCTCTTAGTGAGATTTTGAAGGAGAAGAGAGCGGTTGGAGTGGAAGTAGGTTCCAAGAGTGGCAAGTCGTCTGAGAGTAAAGGAGACAATAAAGACAGAGAAGTTACTAATGGCTCGGAATACACCTCTGTCACAGGTGCACAAAATGGCACTTTGCCTCTAAATAAGGAAGATGTTAAGAACCAGGAATCCGAGAACACGGTTGAAAGAGATGCAGAGAAGACTGATGATGTAACTCATGATCGATCATTTGAAGGAATGATGGACAACGAAGTAATAGGAGAGCAGGAGTATGAAGGTGATGATAAGAAGGATGGTGATTATTACTATGAGCAAGGTGACGAGGGAGACTACAATTATGATGAAGGTGAAAATCCAGAGCAGGAAGAATACATGGATGGGGAGGAGGATGGGGATGACTTTGCTAAGAAGATTGGTGTCATGCTCACATGA 1980 0.4359 MSEKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDSLLSPQAATAGGSSAPPSQSALTSVPHSPYNSTKPAVPCIFFQKGLCLKGERCAFWHGPNPSTSNKVPQVQATNQVTEPPSFKKVFSGPESTQERKISQANVAKPVAGTEAKPAQNVETASHRNVVALERHAPPAMGFDNEASRFKVVNTLPSHAYQSHVSDDHSFHNGKESDEFLRESSPGFDVLVADELRNSDYYDREDQFGKPRGQDGMNLDSLNEYDLGHSVDYKSVADIDQERYCGPQGYDLYDRMQETYEWDQRRNSSERIFRGTTHLERMTHRRSGSPENVGVSDLRHRLSKRRRVNGLKSVVSHDYARQSHDDEQSHRFSSQKDAHQLPLNESALSNRFRGRIKLPANGGDEYVERESDRERNRSTLSPVAMQAPHPGRFRDRLRGKVQEDFERKNFRDQPIRREINGDQDAGFDGPKSLAELRNGKNKEHHFLGKRKSLKEQQQSEDDFMFEGPKPLSEILKEKRAVGVEVGSKSGKSSESKGDNKDREVTNGSEYTSVTGAQNGTLPLNKEDVKNQESENTVERDAEKTDDVTHDRSFEGMMDNEVIGEQEYEGDDKKDGDYYYEQGDEGDYNYDEGENPEQEEYMDGEEDGDDFAKKIGVMLT 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1199 659 MobiDBLite consensus disorder prediction 125 144 - -
Lele54g1199 659 MobiDBLite consensus disorder prediction 531 545 - -
Lele54g1199 659 SUPERFAMILY CCCH zinc finger 79 103 IPR036855 GO:0046872
Lele54g1199 659 Gene3D - 4 53 - -
Lele54g1199 659 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 4 657 - -
Lele54g1199 659 MobiDBLite consensus disorder prediction 475 502 - -
Lele54g1199 659 MobiDBLite consensus disorder prediction 358 374 - -
Lele54g1199 659 MobiDBLite consensus disorder prediction 50 72 - -
Lele54g1199 659 MobiDBLite consensus disorder prediction 606 620 - -
Lele54g1199 659 MobiDBLite consensus disorder prediction 402 417 - -
Lele54g1199 659 MobiDBLite consensus disorder prediction 431 464 - -
Lele54g1199 659 SMART c3hfinal6 79 104 IPR000571 GO:0046872
Lele54g1199 659 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Lele54g1199 659 MobiDBLite consensus disorder prediction 567 597 - -
Lele54g1199 659 ProSiteProfiles Zinc finger C3H1-type profile. 78 105 IPR000571 GO:0046872
Lele54g1199 659 MobiDBLite consensus disorder prediction 621 645 - -
Lele54g1199 659 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Lele54g1199 659 MobiDBLite consensus disorder prediction 51 72 - -
Lele54g1199 659 Gene3D - 71 128 - -
Lele54g1199 659 MobiDBLite consensus disorder prediction 125 163 - -
Lele54g1199 659 MobiDBLite consensus disorder prediction 355 648 - -
Lele54g1199 659 Pfam RNA-binding, Nab2-type zinc finger 23 42 - -
Lele54g1199 659 Pfam RNA-binding, Nab2-type zinc finger 83 103 - -
Lele54g1199 659 MobiDBLite consensus disorder prediction 546 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1199 Lele-ChrLele54 17592833 17595030 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele54g1199 zf-CCCH_2 0.0039 CL0537