Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1196 ATGAAGCGCGATTTCTTTGAAATCTCCGACGACGAATGGGATAACCATTCATTTAAGCCCTCTCGAGTTCTAAAGAAAACACAGACTGCTGCTCCGCCTCCGATCGAGTCCTTTGCTTTTCGGCCCAGTAAGCACGATAATTCTGACCAAAGTAGCGGCGACTGCGTCCAAGTGGAAGAAAATTTGGAGGATGAGGATGTAGAGCTGGAGGGAGGTAAGTCTGGGGCAGGGGCAAATCGTGGCCGTCGGTTCGTTGTCGACGATGAGGAGAGCGACAGGGATGTCGAGGAAGTGTATGAAATAGAGTCAACGGATGAGGATGAAGAAGAAGTGGAGCAAGTGGATGAAAATGATGTGGTAGGGAGGGCTTTGTACAAGTGTGCAAAAATATCTGCAGAATTGAAAAAAGAGCTATATGGATCACCGGGGACTGCTTGCGATCGTTATTCTGAGGTAGAATCTTCTTCAGTGCGAATTGTAAACCAGGATGCTATTGATGTGACTTGCGGGTCTGAGGATTCTGATTTTCAGCCCATCCTCAAGCCATATCAGCTGGTTGGTGTCAACTTTTTGCTTTTGTTGTATCGGAAGGGCATTGGAGGAGCCATACTGGCGGATGAAATGGGTCTTGGGAAAACAGTTCAGGCCATCACATATCTAACCTTGTTGAAACACCTGCACAATGATCCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAATTGGGAAAGGGAGATGAAAAGGTGGTGCCCATCCTTTTCTGTTCTACAATACCATGGCTCTGGACGTGCAACATACTTCAAGGAGTTAAGCTATTTGTCTAAGGCGGGATTACCTCCTCCGTTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAGCGGCACAGTGCACAGCAGAAAGATGATCGCAAAATTCTGAAGCGTTGGAAGTGGAGCTGTGTTTTAATGGATGAGGCACATGCTTTGAAGGATAAAAATAGCTATAGGTGGAAGAATCTAATGTCTGTTGCACGCAATGCAAACCAGCGTTTGATGCTGACAGGGACGCCCCTTCAAAATGATCTACATGAATTATGGTCATTGTTGGAGTTTATGTTGCCAGATATTTTTGCTACAGAAGATGTTGACTTGAAAAAGTTACTGAACACAGAAGATGGAGATTTAGTTGGTCGCATGAAGTCCATATTGGGGCCATTTATTTTACGGCGACTAAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATTCAACGAGTTGAATATGTTGTAATGGAAGTGCAACAGGAAAATGCTTATAAGGAAGCCATCGAGGAGTATCGTGCTATTTCACAAGCTCAAATGGCAACATGTTCTGGGCCTAACTCTAACAATATTCTTGAAGTTCTTCCTCGTCGACAAATTAACAATTATTTTGTTCAGTTTCGCAAGATTGCAAACCATCCCTTGTTGATCAGGCGGATCTATAGTGATGAGGATGTCATTCGCTTTGCTAGGAAGTTACATCCAGTGGGTGCTTTTGGGTTTGAATGTACTTTGGACAGAGTTATCGAGGAACTTAAAAGTTACAGTGACTTCTCTATTCACCGGATGAGATACTTTGGTAAATATTCTAAGATAGAAATGTTATGTCTTCTGCAAAATGTCTGGTATGATTTGATTGGCTTAAGCAATCAAATCATACCAGACAGGAGGGAGGGAGGGCGGGCGGGCTGGCGGGCTGGCTGGCTGGCTGGCGGGCGGGCTGGATGGATGGATGGATGGATGGCCAGTACGCAGGTAACAGAGAGGCAAACAATAGTTGATACGTTCAATAATGATACTTCTATATTTGCTTGCCTGCTTTCTACAAGAGCCGGAGGACAAGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAATCCACAGATTGATAGACAGGCAGAAGATCGTTGTCATAGGATAGGTCAAACAAAGCCTGTAACTATATATCGGCTGGTGACCAAGGGTACAGTTGATGAAAATGTATATGAGATTGCAAAAAGAAAGCTTGTATTGGATGCGGCGGTCCTTGAATCTGGCGTGGAGATGGATGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTGTCTGCAATTTTATTAGGTTAA 2160 0.438 MKRDFFEISDDEWDNHSFKPSRVLKKTQTAAPPPIESFAFRPSKHDNSDQSSGDCVQVEENLEDEDVELEGGKSGAGANRGRRFVVDDEESDRDVEEVYEIESTDEDEEEVEQVDENDVVGRALYKCAKISAELKKELYGSPGTACDRYSEVESSSVRIVNQDAIDVTCGSEDSDFQPILKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDPGPHLIVCPASVLENWEREMKRWCPSFSVLQYHGSGRATYFKELSYLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFATEDVDLKKLLNTEDGDLVGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMEVQQENAYKEAIEEYRAISQAQMATCSGPNSNNILEVLPRRQINNYFVQFRKIANHPLLIRRIYSDEDVIRFARKLHPVGAFGFECTLDRVIEELKSYSDFSIHRMRYFGKYSKIEMLCLLQNVWYDLIGLSNQIIPDRREGGRAGWRAGWLAGGRAGWMDGWMASTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGVEMDDKGDMPEKTMGEILSAILLG 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1196 719 MobiDBLite consensus disorder prediction 24 55 - -
Lele54g1196 719 SMART ultradead3 176 381 IPR014001 -
Lele54g1196 719 CDD SF2_C_SNF 587 668 - -
Lele54g1196 719 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 710 IPR001650 -
Lele54g1196 719 Gene3D - 573 714 IPR027417 -
Lele54g1196 719 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 371 IPR014001 -
Lele54g1196 719 CDD DEXHc_Snf 180 373 - -
Lele54g1196 719 Gene3D - 160 430 IPR038718 -
Lele54g1196 719 Pfam Helicase conserved C-terminal domain 593 657 IPR001650 -
Lele54g1196 719 Pfam SNF2-related domain 200 486 IPR000330 GO:0005524|GO:0140658
Lele54g1196 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 406 IPR027417 -
Lele54g1196 719 SMART helicmild6 571 657 IPR001650 -
Lele54g1196 719 PANTHER SNF2/RAD54 HELICASE FAMILY 65 697 - -
Lele54g1196 719 MobiDBLite consensus disorder prediction 62 81 - -
Lele54g1196 719 FunFam Protein CHROMATIN REMODELING 19 isoform A 151 429 - -
Lele54g1196 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 698 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1196 Lele-ChrLele54 17565771 17571553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1196 178 684 RAD5 or RAD16-like Gene Family AT1G02670 25.812 1.22e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele54g1196 SNF2_N 5.5e-53 CL0023