Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1188 ATGGCCAGGTCCCTGCCTCTTGTTTCCACCATTTTCGTCCTCCTCCTCCTCCTCCTGGCCACTGGGATGGGGCCGATGGTGGCAGAAGCGAGGACATGCGAGTCTCAGAGCCACCGCTTCAGGGGCAGCTGTCTCAGCAAATCTAACTGCGCCAACGTCTGCCGGACTGAGGGCTTCCCCGGCGGTCACTGCCGTGGCTTCCGTCGACGCTGCTTCTGCACCCGACCTTGTTAA 234 0.6197 MARSLPLVSTIFVLLLLLLATGMGPMVAEARTCESQSHRFRGSCLSKSNCANVCRTEGFPGGHCRGFRRRCFCTRPC 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1188 77 ProSitePatterns Gamma-thionins family signature. 31 54 IPR008176 GO:0006952
Lele54g1188 77 Gene3D - 31 77 IPR036574 -
Lele54g1188 77 PRINTS Purothionin signature 32 47 IPR008176 GO:0006952
Lele54g1188 77 PRINTS Purothionin signature 62 76 IPR008176 GO:0006952
Lele54g1188 77 ProSiteProfiles Invertebrate defensins family profile. 41 75 IPR001542 GO:0006952
Lele54g1188 77 PANTHER DEFENSIN-LIKE PROTEIN 1 8 74 - -
Lele54g1188 77 CDD Knot1 42 74 IPR003614 GO:0006952
Lele54g1188 77 SMART gth_4 32 77 IPR003614 GO:0006952
Lele54g1188 77 Pfam Gamma-thionin family 31 77 - -
Lele54g1188 77 SUPERFAMILY Scorpion toxin-like 31 77 IPR036574 -
Lele54g1188 77 FunFam Defensin-like protein CAL1 31 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1188 Lele-ChrLele54 17530995 17531401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1188 1 77 Plant Defensins Gene Families AT2G02100 64.935 6.07e-36 114