Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1178 ATGACTCGTATTCTCAAATCCGCCGACAACTCCACCTCCGTCGCCGCCGCTGCTACCGTCGCCGCAGCGGCCCCCCCGCCTCCCGAGGCAGTCGCTTTGGAATCAGACTTCGTCGTGATCCTCGCGTCTCTGCTTTGCGCTCTCATATGCACGGTCGCCCTCATTGCCGTCTGTCGCTGCACCTGGTTCCGTCGCGGTGGATCTGGAGCCCACGGCGGAGCTCCTGGGCAGTCTCTGGCGAATAAAGGTCTGAAGAAGAAGGTGCTCCAATCCATGCCGAAATTCGCTTACATTGATAGCAATTCCGAGAAGTGGTTGGCCACGTCGGAGTGCGCGATTTGCTTGGCCGAGTTCGCCGGAGCCGACGAGATCCGAGTTCTTCCTCAGTGCGGCCATGGCTTCCACGCGGCGTGCATAGACACGTGGCTTGGGTCACACTCTTCGTGCCCTTCCTGTCGGCAGCTTCTTGCTCTGCCTCCGAGGTGCCGTAGGTGCGGCCTTTACCCGGCGGTTCGCGGTGGAGAAGCCACCAGAATTAGTGGTGGTGAACCGGAGCTCAAGTCCCGACATGACGATAATGCCACTACTGCTAATAATGATTATGTTAATAGTTCAACTAGCGATCCTCAAGGGCCCAGAAATAATACTGGATTCCTTCCATAA 663 0.5762 MTRILKSADNSTSVAAAATVAAAAPPPPEAVALESDFVVILASLLCALICTVALIAVCRCTWFRRGGSGAHGGAPGQSLANKGLKKKVLQSMPKFAYIDSNSEKWLATSECAICLAEFAGADEIRVLPQCGHGFHAACIDTWLGSHSSCPSCRQLLALPPRCRRCGLYPAVRGGEATRISGGEPELKSRHDDNATTANNDYVNSSTSDPQGPRNNTGFLP 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1178 220 FunFam E3 ubiquitin-protein ligase ATL6 74 159 - -
Lele54g1178 220 MobiDBLite consensus disorder prediction 195 220 - -
Lele54g1178 220 MobiDBLite consensus disorder prediction 176 220 - -
Lele54g1178 220 Pfam Ring finger domain 110 153 IPR001841 -
Lele54g1178 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 157 IPR013083 -
Lele54g1178 220 SMART ring_2 111 152 IPR001841 -
Lele54g1178 220 CDD RING-H2_PA-TM-RING 110 153 - -
Lele54g1178 220 SUPERFAMILY RING/U-box 88 163 - -
Lele54g1178 220 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lele54g1178 220 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1178 Lele-ChrLele54 17469636 17470298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1178 32 192 C3H Transcription Factor Family AT1G20823 55.556 9.51e-55 172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0014 52 113979 117842 Lele54g1178 54 17469636 17470298 CCT
Lele54g1178 54 17469636 17470298 Lele56g0264 56 2065380 2065769 hybridization