Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1173 ATGAAATACTGCCTCCTTAGGATTACAAGCTTTATGCTTTGGCTAATTCCGCTGTTATGGAGCTTAACTTGCTATGCTTTGAGAATAGAAAGCTCCCAAATCTTGCCTGTGGATCATATTGAGCAAGGCTTTAATGGCTCATCCCCACCCTTAAGCCGTCCAAGCCGATCTATTTTGTCCTTTTCACCTAAGCCCAGTACGACCCTTGTTGCTACCCTAGATGGGACAATATACTTGGTGGAGATTGGTTCTATGAGGGTAATATGGTCATTACCTACTGGATCACCAATCTACCACTCATATCAAGCTCCTCTCAACAATGATATTGTTAAAGAAAATGTATGTGGATTAGCTAGCAGGTTCATGGAATGTGGAGATGATTGGGCACTATATATCCAAAGCAAGCACTTTGGTAAAATGAAACTCTCAACATCTGTGGCAGATTTTGTTGCTGCTACACCTACCTTGTCAGATGATGGAGGTGTTATTCTTGGATCCAAGAGAAGTACTTTGTTCGAAATTGATGCTATAAGTGGAAAGCTCGTTCGAAGTTATGCTGCTGATAATCTTTCTGCTGTGTGGAGTAATGACATGCATAGGGGAACAAATATTGTCAGTACAAAGAATAAAGGACTGGCTGGTCCTGCAATGCTAAGCACACCGGAGCTTCTGCTTAAAATAATTAGAACAGATTATTCTCTACAAGGTGTAGGTCCTAAATCTGGAAAAGTTTTGTGGACTATGAATGTAGCTGAATTTAAGGCGTCATTATTCTGTGGACATAATGAAAATCTGTTTACTGGGGCTTCGTTAGATTCAGAGGATAAATATGCCTCCAAAAATGACTTGGATTTTGCTATGCCGTATGCATGTCATGAGTTAAAAGAAGTACATCGCTTGCGAAAGAATCTTCTTTTTGGTGATCTCACTGAAAGTTTACCTGGGGCGTATCATGATAAGGAAATGCTTCCAGAGCCTAATTCAGATCTGATGCTTCTTCCACAGTCTAATTTAGATGCTTCTTTAAGTCAACATGATGATAATATGACGCTTCCTACTTTTCCAAATGCCTTACCTTCTTTGCCTCAAAATTTTAATCCCCATGTCAATGATGATAATGCAGCCACTCTCTCTCATCCTCCTGCAGAGATTAGTGCACGAGGGGAAGTTGATAGAAACAAGGTGATAGAATGGCCAATATCATCTTTATTATTGTTTATGCTCTTATTTCTGGGTCTTTTGATGTACCATCTTCCAGTGGTCAAAAGGCCAGTTATGTCGTTGGTCCAGAATGGTGGATCTGAAATTAAAGTTTCTCCTCCTCTTAAGAAAAAAAGAGCCCGTAAGTCCGGAAAAAACAATGGCATTGATGACAAAAGAAATAAGCATCTATCATCAAAAGATGAGGATATAATGTCTAGTGGCAAAATTGCTAGGGAAGCATTGCCACATGTTGAAAAAGTTGAAGGAGCCAATGCACGTCAAATCGGCAAACTCTTTGTATCAAATAAAGAAATTGCCAAGGGAAGTAATGGTACTATAGTGCTTGAGGGAACATATGAAGGTCGGGCAGTTGCGATCAAGCGTTTGGTCCAGTCCCATTATGATATTGCCGTTAAAGAAATTCAAAATCTTATTGCATCGGATCATCATCCTAACGTTGTCCGATGGCATGGGGTTGAATTTGATCAAGATTTTATATATCTTGCTCTGGAAAGTTGTATATGCAATTTAGATGATTTGATTCAGATTTATTCAGATTGCTCTTCAAAACCAGTGTCTAGTAAAGACCAATCTTCTGAGTGTTTGAAGGTCCAAATAGAGATGGGAAAGGATAACATGCAAGAGCTTTGGAAAGCAAATGGCCATCCATCCTCTTTATTATTGAAGTTGATCAGGGATGTAGTTTCTGGACTTGTTCATTTACATGAATTGGGAATAATACATCGTGATTTGAAACCTCAGAATATTTTGATAACTAAGGAAAGACATTTAGGTGCAAAAGTTTCTGATATGGGCATCAGCAAACGCCTTCTTGGAGATATATCTTCCTTTAGTCATAATGGTACCTGTTATGGCAGTTCTGGTTGGCAAGCACCAGAACAACTTCTTCAAAGACGTCAAACACGAGCAGTAGATTTATTTAGTCTAGGTTGTGTTATCTTTTTTTGCATAACTAAGGGAAGACATCCATTTGGAGAGCGTCTTGAACGTGATTTCAATGTTGTGAAAAATAAAAAGAACCTTTCTCCAGTGGAATTCATTCCTGAGGCTGAAGATCTTATTTTTGGTTTATTAAACCCTACTCCTAAGTTAAGGCCAAAAGCTATTGAAGTGCTGCATCATCCTTTCTTCTGGAGTTCTGAGATGAGACTTTCATTTCTTCGTGATGTTAGCGATAGGGTGGAACTAGAAGATAGGAAGATCGGTTCTTATCTCTTAATGGCATTAGAAAGTATTGCGCCAAAGGCTTTAGATGGTGCAAATTGGGATGAAAAGATGGAACCTGCATTCATTGCTAACATTGGCCAATACAGGCGATATAAGTTTGACAGTGTTCGTGACTTGTTGCGAGTTATGAGAAACAAGCTGAATCACTATAGAGAATTGCCTCAAGAAATTCAGCAACTTCTAGGACCTGTTCCAGAAGCATTCAATGCTTACTTTGCTAGTCGATTTCCTAGACTCTTGATTAAAGTGTATAAAATTATACATAAATATTGCGAGCTGGAGGAATGTTTCCAAAGGTATTTTAAAATTGTTGACTAG 2769 0.3875 MKYCLLRITSFMLWLIPLLWSLTCYALRIESSQILPVDHIEQGFNGSSPPLSRPSRSILSFSPKPSTTLVATLDGTIYLVEIGSMRVIWSLPTGSPIYHSYQAPLNNDIVKENVCGLASRFMECGDDWALYIQSKHFGKMKLSTSVADFVAATPTLSDDGGVILGSKRSTLFEIDAISGKLVRSYAADNLSAVWSNDMHRGTNIVSTKNKGLAGPAMLSTPELLLKIIRTDYSLQGVGPKSGKVLWTMNVAEFKASLFCGHNENLFTGASLDSEDKYASKNDLDFAMPYACHELKEVHRLRKNLLFGDLTESLPGAYHDKEMLPEPNSDLMLLPQSNLDASLSQHDDNMTLPTFPNALPSLPQNFNPHVNDDNAATLSHPPAEISARGEVDRNKVIEWPISSLLLFMLLFLGLLMYHLPVVKRPVMSLVQNGGSEIKVSPPLKKKRARKSGKNNGIDDKRNKHLSSKDEDIMSSGKIAREALPHVEKVEGANARQIGKLFVSNKEIAKGSNGTIVLEGTYEGRAVAIKRLVQSHYDIAVKEIQNLIASDHHPNVVRWHGVEFDQDFIYLALESCICNLDDLIQIYSDCSSKPVSSKDQSSECLKVQIEMGKDNMQELWKANGHPSSLLLKLIRDVVSGLVHLHELGIIHRDLKPQNILITKERHLGAKVSDMGISKRLLGDISSFSHNGTCYGSSGWQAPEQLLQRRQTRAVDLFSLGCVIFFCITKGRHPFGERLERDFNVVKNKKNLSPVEFIPEAEDLIFGLLNPTPKLRPKAIEVLHHPFFWSSEMRLSFLRDVSDRVELEDRKIGSYLLMALESIAPKALDGANWDEKMEPAFIANIGQYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQQLLGPVPEAFNAYFASRFPRLLIKVYKIIHKYCELEECFQRYFKIVD 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1173 922 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 789 922 - -
Lele54g1173 922 MobiDBLite consensus disorder prediction 433 470 - -
Lele54g1173 922 Gene3D KEN domain 788 921 IPR038357 -
Lele54g1173 922 Gene3D Phosphorylase Kinase; domain 1 485 572 - -
Lele54g1173 922 Pfam Ribonuclease 2-5A 791 918 IPR010513 GO:0004540|GO:0006397
Lele54g1173 922 SUPERFAMILY Protein kinase-like (PK-like) 500 790 IPR011009 -
Lele54g1173 922 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 610 787 - -
Lele54g1173 922 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 57 251 IPR011047 -
Lele54g1173 922 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 492 572 - -
Lele54g1173 922 ProSiteProfiles KEN domain profile. 788 920 IPR010513 GO:0004540|GO:0006397
Lele54g1173 922 MobiDBLite consensus disorder prediction 451 470 - -
Lele54g1173 922 ProSiteProfiles Protein kinase domain profile. 500 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1173 922 CDD RNase_Ire1 789 918 - -
Lele54g1173 922 PANTHER IRE1-RELATED 140 919 IPR045133 GO:0004521|GO:0004674|GO:0030968
Lele54g1173 922 Pfam Protein kinase domain 502 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1173 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Lele54g1173 922 Gene3D Transferase(Phosphotransferase) domain 1 607 787 - -
Lele54g1173 922 Gene3D - 48 280 IPR015943 GO:0005515
Lele54g1173 922 SMART serkin_6 500 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g1173 922 SMART PGNneu 851 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1173 Lele-ChrLele54 17430510 17435000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1173 526 784 MAP Kinase Kinase Kinase AT3G06030 25.475 1.13e-18 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Lele54g1173 Pkinase 2.7e-35 CL0016