Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1150 ATGGGATCCAGTAGTAGCAAAGCCACCTCCTCTTGCAGTTCGTCGTCATCTTCCGGCAGTTTTCGGAAGGTTCGATCTAAGAAAGGGCATAGAGGATTCCAGTATTGTCTGGGAACAACCTCTGGATCTCATGACGAACAGAATAAAGTAAATGGCCGTGGTGTCACATACAACTGTTGCACTGAAACACGCTCAAATGAGATGAAATCAAAGTCTTTTAGAGATGATAAAAAGAAAAGATCTGATGACATGCCTTCCAACATGGACCTTAACGAGTGGGCTCAAACAAGCATCTCCAGTAATTCCTCCAGAACTCGTAGCCAATCTACTCGTACTTCTTCAACTGGTAGTCGGTTTCTTTCTCGGTTTAGCCTTATTCCTGGTAATTTAAGCTTCAGACTTAGCAGAACCCCCAGTTTAAGGTCATCAAGGTCTTGCCATGTTTCTTCTACAACGATGTCTATATTCAACAATGAAGATGATCTTAGTCTGCATCCAGGACCCCCTGGCAGCTTGGTTAACAGAAATAAAACTCAACAATCATCAGATTCATCTGGCAACTTGCAGAGTACTCCCTCACATAATGTGGTTAGAGATGGTAATGGTCCATGTGATGGGCTGGATATAAACTTGTTTTCTCCAAGAATTCATGCTGAGACTGAAAATGTTGAGGTTCGACAAAATGGAGCACGAGAACCTGTTGAACGGAATTTTCGGTATAGCCGGACTCCAAGTGTTGGGAGGCTTCGTAATAGAGTTCTTCGTCAATCAACTTTATCTGATGTCAGGTTTTGCCCCCAGCAACAAGAGAGAGGAGCAAGGGATACTAGAGAGGATAATGAAAGACAAGCAGGAGATGGAGGTTCAAGAGTATTACCATCTTTTAGTAATGCTATAAACTCTTCTTCTATGTCTGGTTATCCTCCATCCAGTGTGTCTAACTCCTTATTCAACATCCAAGACTATGAGGTTGAGAATTCGCGGTCAAGAGAAGCTAGGTACCAAGAACTGCATGAACACAGATCCAACTTCCTTGAACGGAGAAGAAGAATAAGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTATCCGGACATGACAGATCTTGTATCTTGTCTGGTCAACATAGAAATGGTCATTGTACATGCCGAATTGGTAGTCGTGATCCGAGTTCAATTGATGATACTGGTACTAGAGCTAGCATATCAAGAATTGTAATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGCGGTTTTATCTTCTCGCCCTTCTGTGTCTTCCATTGGATCTGTTCCTGCGCCTAATGATGTTGTGGAGTCATTGCCAGTCAGATTATACACAAACTTGCATAAACATCAAGAAGATGCTGCCCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGTGAGCTGCCTTGCCATCACCTATTTCATAGAACATGCATAGACAAGTGGCTCAAGGAAATTCATAGGGTATGTCCACTATGTCGGAGGGACATCTGCATATCTGATTCACTCTAA 1569 0.4308 MGSSSSKATSSCSSSSSSGSFRKVRSKKGHRGFQYCLGTTSGSHDEQNKVNGRGVTYNCCTETRSNEMKSKSFRDDKKKRSDDMPSNMDLNEWAQTSISSNSSRTRSQSTRTSSTGSRFLSRFSLIPGNLSFRLSRTPSLRSSRSCHVSSTTMSIFNNEDDLSLHPGPPGSLVNRNKTQQSSDSSGNLQSTPSHNVVRDGNGPCDGLDINLFSPRIHAETENVEVRQNGAREPVERNFRYSRTPSVGRLRNRVLRQSTLSDVRFCPQQQERGARDTREDNERQAGDGGSRVLPSFSNAINSSSMSGYPPSSVSNSLFNIQDYEVENSRSREARYQELHEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRIGSRDPSSIDDTGTRASISRIVMLAEALFEVLDEIHQQSAVLSSRPSVSSIGSVPAPNDVVESLPVRLYTNLHKHQEDAAQCYICLVEYEDGDSMRELPCHHLFHRTCIDKWLKEIHRVCPLCRRDICISDSL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1150 522 FunFam Putative RING zinc finger domain superfamily protein 440 518 - -
Lele54g1150 522 SMART ring_2 471 512 IPR001841 -
Lele54g1150 522 ProSiteProfiles Zinc finger RING-type profile. 471 513 IPR001841 -
Lele54g1150 522 Pfam Ring finger domain 470 513 IPR001841 -
Lele54g1150 522 MobiDBLite consensus disorder prediction 158 202 - -
Lele54g1150 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 518 IPR013083 -
Lele54g1150 522 MobiDBLite consensus disorder prediction 68 86 - -
Lele54g1150 522 MobiDBLite consensus disorder prediction 1 22 - -
Lele54g1150 522 SUPERFAMILY RING/U-box 449 519 - -
Lele54g1150 522 MobiDBLite consensus disorder prediction 1 29 - -
Lele54g1150 522 MobiDBLite consensus disorder prediction 260 294 - -
Lele54g1150 522 MobiDBLite consensus disorder prediction 268 285 - -
Lele54g1150 522 MobiDBLite consensus disorder prediction 172 197 - -
Lele54g1150 522 MobiDBLite consensus disorder prediction 88 117 - -
Lele54g1150 522 CDD RING-H2_PA-TM-RING 470 513 - -
Lele54g1150 522 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 521 - -
Lele54g1150 522 MobiDBLite consensus disorder prediction 68 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1150 Lele-ChrLele54 17252315 17256466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1150 71 520 C3H Transcription Factor Family AT5G45290 49.359 3.32e-111 339