Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1132 ATGCGTTTGTCCGGCCATTCGAGGCGTTCTGGGTGCTTTAATAAAGAAGCCGTGGGAATCAACAAGAAGCCGGGAATTCTCATTTTTAACTCCTGCTTACGCTGGATCGATCGAACCGCCGGCTCGAAGTTTGTCACTATAAGCGCTGGCGTTCACTACGGTGCCCTGAGCTGCTGCACCCTGAATAGCCACCTTGTTCTGGCATCTTTGGTGCTATGGGGGCAATTGGGAGGTTATAAAAGCTACAGTTGCAACGCCGGAACTACTGATTTGCATGTTCAAGGAGCATTTTCTTTTCTTCTTTTGGTTTCGGTGATTCTTTTGGAAACAAAACTCGAAAGCATACGAATCTTTGGGGGCGGAGGAATGCTGGGGTTTGGTTTTCTGGGAGAAAGGTGGGTTTTGCGTCCTTCTCTGTCAAAAGCCTATCCATACGACATGGCGTATGATTCAGATAGCCCCTCACAAGATGGGAGGGATGAAGATGATGATGAAGAATATGAGGAGGCTGGCCAGGGCAACCGTTTGCTGGGATTCATGTTTGGAAATGTTGATAATTCTGGTGATCTTGATGTTGATTACCTTGATGAGGATGCAAAGGAGCATCTTTCTGCACTTGCTGACAAGTTGGGTCCTTCCCTGACAGATATAGATTTGTCAGGAAAATCGCCACAAACACCACCTGACATTGTCGAACAAGACTATGGTGAGAAAGCTGAAGGTGCAGTTGATTATGAAGATATTGATGAAGAGTACAATGGTCCAGAGACAGAAGCTGCAAATGAAGAGGAGTATTTATTGCCCAAAAAGGATTTTTTTTCTGTTGAAGCCTCTCTTGAAGCTTTGAAATCCAGATCTTCTGTCTTTGATGATGAAAATTATGACGAGGAATCTGAAAAGGAGCAAGACTTGGAGAATGACACTCCTGAAGCTAATAACATCTCTCCAACTGGGGAGCCGGTAGTGTCTCTTGTTGATGCATCTAAAGTAGAGAAAAGTCAAGAACTTGAATCACATGATGGCTCACAGCAGTCTGAAGAATTGGACACTGACTTGCAAAAACTCCTGGAGGAAGGGCCTGAAGTTTTGAAAGGTTCTACTCCGTTGCCTGTTTTATGTATGGAAGATGGGATGGTCATTTTAAGGTTCTCTGAGATTTTTGGTATTCACGAACCTTTGAGAAAAGGAGGGAGGAGAGAGCAACGACCTTCTATTCTTAAAGATAGATACAAGTCCTTAAATTTATCTGATATCGTAGAAGAGGATGAAGAGGCATTCTTCAGAGGTTCCTCTCACAGTCTCCTTCTAAATAAACAGGCTTGTGTAGTTCAAAATGGTATAACAGAAAGCAGTGATGCAGACTTGGATTTATCGAAATTTGGATATCTTCATGGGGCTGCCTCAATGACTGTGAAAGATGGCCCACAACAGAAGGACTCTTGTCTTAGTGCTGAACCAATGAAACAGGATTGCTCAGGCCTTGCTTGGGAAGGGCATTCTCTCTTGTGTGCAGATTTTTATCCCCTTGATCAGCAAGACTGGGAAGAGGAAATCATTTGGGGCAATTCCCCTGCTGCAAGTAACAATAATCATGAGAGCTGTGAAATTTCTGGATCTGCATTGGGACCTCTGGGGTGTGATGAAGGAGAAATTGAAAGTGGGATGCAAAATATCCAGTTGGAGCTGCCGAAGGAATTGGAAGAAAAAAATCATAGTGTTTTCTTGTGCAGCTCTCCTGTCTCATTAGAGCCTTTTGGTTCAAGGGATTTTTCAGGAGCTAAAACCAATTCATTGTCAAAGAATCTATTTCATCCGCAACTCTTGAGGTTAGAATCCGGGCCTGAAGTGGATATCTCTAATCCTGCAGATGACAGAAGGGAGAATATATCTGAGGAGCATAATCAAAATGGCCTAGTAAAGCATTTCACCAAACTGACATTGCAAAACCAGGATATGATGGAAGGGTCTTGGTTAGACAATATTATATGGGAGGAGGTCAATAGACCTATTATGAAACCAAAGCTAATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTGGATAGTAAGGATGGTAGACATCTCCGCCTGCATGCAGGGGCAATGATTTTAACTCGTCCTTTAAAATCAAGCAATGGAGATTCTTCTGAGCAACCTTGGCATGGAAATCAGCATGGATGGCGATCCATTGCTAATGATAAACATTATTCGAACAGGAAAACTTCCCAGCAACTGAAATCAAATTCTAAAAAACGCTCAGCTCATGGTGTAAAAGTTTTTCACTCTCAACCTGCGCTGAAGCTTCAGACAATGAAATTGAAACTGAGCAACAAAGATATTGCCAATTTTCACCGACCACGAGCTTTATGGTATCCTCATGACAATGAGATGGCTGTCAAAGAACAAGGGAAACTGCCAACACAAGGACCAATGAAAATTATCATGAAGAGCTTGGGTGGCAAGGGGAGTAAACTGCATGTTGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCATCTAAAAAGCTAGATTTCAAACCATTGGAAACAGTGAAAATATTTTATCTTGGGAAGGAACTTGAAGATCAGAAATCACTTGCTGCACAAAATGTTCGACCAAATTCCTTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCTAGGGCACAAAGGGTTCCTGGTGAGAACAAATCCTTGCGTCCACCTGGGGCATTCAAGAAAAAGTACTGTGAGGAAAGACCTTTATTATTGAGCAATGCTGGAATGGGTGCCAGACTTTGTACGTACTATCAAAAATGTTCTCCAGATGATCAAGGTGGCTCTTTATTACGCAACACAGATAGTAGCCTGGGGCATGTGATTTCACTGGATCCTGCTGATAAATCTCCATTTCTTGGAGATTTAAAACATGGCTGCAGTCAGTCATCACTGGAGACAAACATGTATAGGGCACCCATATTTCCTCATAAAGTGCCATTAACCGACTACCTGCTAGTTCGGTCATCGAAGGGAAAGCTATCATTAAGACGGATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCTCTTATGGAGGTACTGTCACCTGGAAGTAAGAATCTTCAGACATATATGATGAACAGGCTACTGGTACACATGTGCCGTGAATTTCAAGCTGCAGAGAAGCGGCACTTACATCCATACATTCGTTTTGATGGGCTGCTGTCTCAGTTTCCTTACCTATCCGAAGCTTCTATTCGCAAGAAAATTAAGGAATATGCTATTTTACAGAAGGGAACAAATGGACAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATGTGGTCGGAGGATGAATTGAGAAAAATGTTGACGCCAGAGCTTGTTTGTGCTTATGAAAGCATGCAAGCTGGTCTATACCGTCTAAAACATTTAGGAATTACTGAAACTCATCCTACTAATATATCTTCTGCAATGAATCGGCTTCCTGCTGAAGCAATTGCACTGGCTGCCGCATCGCACATTGAGAGGGAGCTGCAAATCACTCCATGGAACCTGAGTAGCAATTTTGTTGCCTGCACAAGCCAGAGTGAAGGGGATTATCATGTTGTTGATATGCCGGAATTTGATGCTAAAAGTGTGGAAACGTGGTTGAGGTTTAGTATTCTTTTTACTCTGGGGAAGGAAAATATTGAGCGAATGGAAATTACTGGTGTTGGTGATCCATCTGGGCGTGGTTTGGGTTTCAGCTATGCTCGGGCTCCTCCAAAGGCGCCAGTGTCAAGCGCAGTGGTGAAGAAGAAAACAGCTGCCCCCCGGATTGGTTCCACTGTTACTGGAACAGATGCTGATCTACGCAGATTAAGCATGGAGGCTGCAAGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATTGCAAAACAAACCAGGTGGCATCGAATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCAGCATCTGGAGTTAAGGTTGACCCAACAACTATCAGCAAATATGCTCGTGGCCAACGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGGGAGAAGTGCCAGGAGATTTGGGATCGACAAGTTCAAAATCTTTCAGCTGTGAATGGTGATGAAAATGAGAGTGATTCCGAAGGAAACAGTGATTTAGATTCTTTTGCTGGTGATCTGGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAGGTTACCAATGGTTTTAAACGTGACAAGGCTGATGGCGTCAAGGGTCTTAAAATGAGAAGACGACCAACCTTAGCCCAGGCAGAGGAGGAAATAGAAGACGAAGCTGCTGAGGCTGCTGAACTATGCAGATTACTCATGGATGATGATGAAGATGAGAGGAAGAAAAAGAAAAAGACTAAATTTGTTGTGGAAGAAGCAGGTGTAATTCCAAAACTACAGCCAAGATTTGTCTCTGACAATACAGATCAGGTGAACCAAATAACTAATACTGTGCAACTAGACGGAGCCAATATATTGAAAGAAAATACAGTTACAAATCTCAGGGAGGAGGATGGCATTTCTGCTAGAAAAAGCAAATCAGTGAAGGTCAATAAAACTAAGAAGAGTGACCTTTCACCTATTAGTGTGGCAAATAAGAAAATAAAGTTAAATATTGGGGAGCCGCCAAAGGTATTCAAGGAGAAAAAGCCATCCAGGGAAAGTTTTGTTTGTGGAGCTTGTGGCCAGCTTGGGCACATGAGAACAAACAAGAACTGTCCAAAATACGGTGAAGATCCAGAAGCACAACCTGAATCTACAGACGTGGAAAAAACGGGTGGAAAATCAAGCTTGTTGGATCATTCTGGTCAGTCACAGCATAAAGCCGTTTCCAAGAAGCTTATTTCAAAAAGCTCATCAAAAATTGCTCTGGTTGATGCTTCTGAGGGAGAAAAATCTAGTTTGAAGACGAAAGTTATTCCTGTGAAGTTCAAATGCAGCTCCACTGAAAAACCTGTTATTGAACCCACACAGAGCTCTGATAAGCCAGTCACTTCTGACTCAGAAACTGCCAAGTCTGCTAAGATTAGTAGAATCTTAATTCCCAAGAAAGTGAAGTCAGATGATATGCAAGCCGAGTCTCGTAAACATTCCATTGCTATACGCCCTCCATCTGATCCAAGTAGAAGTCAAGTTGATTCTCATAAGCCGTCAATTAAAATTCGACCACCTACAGAAACGGATAGGGAGCAGCCCCAAAAGAAAATTATTATAAAACGCACGAAGGATGTTATTGATCCGGACCAGTTCAGTCCTAGTGAAAACATGCGATTTGAGCACAGAAAAACGAAAAGAATTGTTGAATTGTCAAATTGTGAGAAGCACAGAAAACAGGAGACCATGTATAGATCTGAAGACTCGTTGGCAAAGCAGAAAGCTAGAGAGGATAGAAGATGGTGGGATGAGCAAGAGAAAAGGAGAAAAGAAGAAAGATTCCGAGAAGAACGGGCAAGGAGGCTTCATGAGGAAGAAATGAGGATGCTAAAAGAGCAAGAAAGGTTAGCCGAGTTAAAAAGATACGAAGAAGATATTAGGAGAGAGAGGGAGGAGGAAGAACGGCAGAAAGCAAAGAAGAAGAAGAAGAAGGCAGAGTTCAGAGACGAGTATATAGATGACCACAGAACAAGATTTAACAACAGAGTGATAGAAAGAGAACGGAGTGGAAAAAGAAGATCTGTTGTTGAGTTGGGAAGGTACGCAGCCGAATATACACCGCCACCAAAACGGCGCAGAGGTGGAGGGGGAGAGGTTGGTTTAGCAAACATTTTCGAGCATATTCTCGAGGCGCTCAAAGGACGGTATGAGCTGTCGTACCTTTTCTTGAAACCCGTGTCCAAGAAAGAAGCTCCCGACTACCTGGACATTATCGAGAGGCCGATGGATCTTTCAAGAATCAGGGAAAGGGTGAGGAATATGGAGTACAAAAGCCGGGAAGATTTCAGACACGATGTGTGGCAGATTGCGTATAATGCCCACAAGTATAACGATGGGAGAAACCCAGGAATTCCTCCTCTTGCTGATCAGCTTTTAGAGCTTTGTGATTATTTGTTGAACGAGAATGATGATAGCCTAACTGAAGCTGAAGCTGGTATTGAAACTAGGGATTTCTAG 6150 0.4267 MRLSGHSRRSGCFNKEAVGINKKPGILIFNSCLRWIDRTAGSKFVTISAGVHYGALSCCTLNSHLVLASLVLWGQLGGYKSYSCNAGTTDLHVQGAFSFLLLVSVILLETKLESIRIFGGGGMLGFGFLGERWVLRPSLSKAYPYDMAYDSDSPSQDGRDEDDDEEYEEAGQGNRLLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDIVEQDYGEKAEGAVDYEDIDEEYNGPETEAANEEEYLLPKKDFFSVEASLEALKSRSSVFDDENYDEESEKEQDLENDTPEANNISPTGEPVVSLVDASKVEKSQELESHDGSQQSEELDTDLQKLLEEGPEVLKGSTPLPVLCMEDGMVILRFSEIFGIHEPLRKGGRREQRPSILKDRYKSLNLSDIVEEDEEAFFRGSSHSLLLNKQACVVQNGITESSDADLDLSKFGYLHGAASMTVKDGPQQKDSCLSAEPMKQDCSGLAWEGHSLLCADFYPLDQQDWEEEIIWGNSPAASNNNHESCEISGSALGPLGCDEGEIESGMQNIQLELPKELEEKNHSVFLCSSPVSLEPFGSRDFSGAKTNSLSKNLFHPQLLRLESGPEVDISNPADDRRENISEEHNQNGLVKHFTKLTLQNQDMMEGSWLDNIIWEEVNRPIMKPKLIFDLQDDQMHFEVLDSKDGRHLRLHAGAMILTRPLKSSNGDSSEQPWHGNQHGWRSIANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPRALWYPHDNEMAVKEQGKLPTQGPMKIIMKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKPLETVKIFYLGKELEDQKSLAAQNVRPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKYCEERPLLLSNAGMGARLCTYYQKCSPDDQGGSLLRNTDSSLGHVISLDPADKSPFLGDLKHGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLHPYIRFDGLLSQFPYLSEASIRKKIKEYAILQKGTNGQSILVKKRNFRMWSEDELRKMLTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMNRLPAEAIALAAASHIERELQITPWNLSSNFVACTSQSEGDYHVVDMPEFDAKSVETWLRFSILFTLGKENIERMEITGVGDPSGRGLGFSYARAPPKAPVSSAVVKKKTAAPRIGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQNLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEVTNGFKRDKADGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDDEDERKKKKKTKFVVEEAGVIPKLQPRFVSDNTDQVNQITNTVQLDGANILKENTVTNLREEDGISARKSKSVKVNKTKKSDLSPISVANKKIKLNIGEPPKVFKEKKPSRESFVCGACGQLGHMRTNKNCPKYGEDPEAQPESTDVEKTGGKSSLLDHSGQSQHKAVSKKLISKSSSKIALVDASEGEKSSLKTKVIPVKFKCSSTEKPVIEPTQSSDKPVTSDSETAKSAKISRILIPKKVKSDDMQAESRKHSIAIRPPSDPSRSQVDSHKPSIKIRPPTETDREQPQKKIIIKRTKDVIDPDQFSPSENMRFEHRKTKRIVELSNCEKHRKQETMYRSEDSLAKQKAREDRRWWDEQEKRRKEERFREERARRLHEEEMRMLKEQERLAELKRYEEDIRREREEEERQKAKKKKKKAEFRDEYIDDHRTRFNNRVIERERSGKRRSVVELGRYAAEYTPPPKRRRGGGGEVGLANIFEHILEALKGRYELSYLFLKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDVWQIAYNAHKYNDGRNPGIPPLADQLLELCDYLLNENDDSLTEAEAGIETRDF 2049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1132 2049 SMART bromo_6 1925 2035 IPR001487 GO:0005515
Lele54g1132 2049 Pfam TATA box-binding protein binding 163 207 IPR009067 -
Lele54g1132 2049 MobiDBLite consensus disorder prediction 1659 1748 - -
Lele54g1132 2049 Pfam Ubiquitin family 817 885 IPR000626 GO:0005515
Lele54g1132 2049 MobiDBLite consensus disorder prediction 710 727 - -
Lele54g1132 2049 Coils Coil 1431 1451 - -
Lele54g1132 2049 SMART ubq_7 813 885 IPR000626 GO:0005515
Lele54g1132 2049 MobiDBLite consensus disorder prediction 1581 1647 - -
Lele54g1132 2049 MobiDBLite consensus disorder prediction 1790 1813 - -
Lele54g1132 2049 MobiDBLite consensus disorder prediction 1756 1775 - -
Lele54g1132 2049 ProSiteProfiles Ubiquitin domain profile. 813 883 IPR000626 GO:0005515
Lele54g1132 2049 MobiDBLite consensus disorder prediction 288 319 - -
Lele54g1132 2049 CDD Bromodomain 1935 2030 - -
Lele54g1132 2049 SUPERFAMILY Bromodomain 1917 2038 IPR036427 GO:0005515
Lele54g1132 2049 MobiDBLite consensus disorder prediction 738 752 - -
Lele54g1132 2049 Gene3D - 167 214 IPR036741 -
Lele54g1132 2049 PRINTS Bromodomain signature 1978 1996 IPR001487 GO:0005515
Lele54g1132 2049 PRINTS Bromodomain signature 1962 1978 IPR001487 GO:0005515
Lele54g1132 2049 PRINTS Bromodomain signature 1948 1961 IPR001487 GO:0005515
Lele54g1132 2049 PRINTS Bromodomain signature 1996 2015 IPR001487 GO:0005515
Lele54g1132 2049 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 159 2048 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Lele54g1132 2049 MobiDBLite consensus disorder prediction 1726 1748 - -
Lele54g1132 2049 ProSiteProfiles Bromodomain profile. 1945 2015 IPR001487 GO:0005515
Lele54g1132 2049 MobiDBLite consensus disorder prediction 1602 1636 - -
Lele54g1132 2049 MobiDBLite consensus disorder prediction 710 759 - -
Lele54g1132 2049 FunFam Transcription initiation factor TFIID subunit 1 795 885 - -
Lele54g1132 2049 Pfam Protein of unknown function (DUF3591) 732 1315 IPR022591 -
Lele54g1132 2049 Pfam Bromodomain 1937 2011 IPR001487 GO:0005515
Lele54g1132 2049 MobiDBLite consensus disorder prediction 147 170 - -
Lele54g1132 2049 ProSitePatterns Bromodomain signature. 1950 2007 IPR018359 -
Lele54g1132 2049 SUPERFAMILY TAF(II)230 TBP-binding fragment 170 208 IPR036741 -
Lele54g1132 2049 Coils Coil 1831 1881 - -
Lele54g1132 2049 MobiDBLite consensus disorder prediction 1664 1686 - -
Lele54g1132 2049 Gene3D - 1804 2048 IPR036427 GO:0005515
Lele54g1132 2049 Pfam Zinc knuckle 1571 1591 IPR041670 -
Lele54g1132 2049 SUPERFAMILY Ubiquitin-like 783 883 IPR029071 -
Lele54g1132 2049 MobiDBLite consensus disorder prediction 1694 1715 - -
Lele54g1132 2049 CDD Ubl_TAFs_like 813 884 - -
Lele54g1132 2049 Gene3D - 795 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1132 Lele-ChrLele54 17116276 17134374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1132 813 883 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.437 3.77e-08 53.1