Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1128 ATGATGGAGAAGAGCAAGAATGGGAGGCCGTCAGGTGGTCGAGAGTTCTATGCAAATGGAAATCGCATGAATACTGAAGAAGTTGAAGCCAAACTTAACCAAGGAGATGTTGAAGCCGCTGAATCTGCATTGAAAGAGGGCTTATCTATCACTTCCGAGGAAGCAAGAAGTCTTATCGGGAAGCTAGAGTATCAAAGAGGAAATTATGCAAGTGCTCTTCGTGTGTTTGATGGGGTTGATCTCCAAGCTGCCCTTCAGCAATTACAATCTTTAGTTTCTGACATATCAGCGGCCAAGAAAGCATGCGAGGCACCTACCTCAATCCCTAGGCATGCTGCTAGTTTGATGCTTGAATCCATCTACTTCAAAGCAAAAACTCTACGAAAGCAGGGGAAAATAGCTGAAGCTACCGCTGAATGCAAAAATGTGCATGAGGGTATTGAGAAGACATTCAATCAGGGTGTATCTGATATTCAATTGGACTACACATTGCAAGAAGTAGTCAGTGGCATTGTAGGACTTCTTCCAGAGCTTACAAAGCAAGCGGGTAGCTATCAAGAGGCATTGTCTGCTTATAGGCGTGCTCTTCAACTTCTGAGTCAATGGAACATTGATACTGATGGTTGTGCTAGAGTTCAGAAAGGACTTGCCAAGCTTTTGCTGTACGGTGGGTTCGAGGCTAGCACACCCAAGGCGACCGATCAGGGCGAGGGGTTTTATGTGCCTAAAAACAATCTGGAAGAGGCAATTCTGCTTCTAATGCTTGCTGTGAGGAGACTTTGTGTTGACAAGTCCAAATGGGATCCTTCAGTGATGGAGCACCTGACTTTCGCACTTTCTGTATGTGGCCAAACTTCTGTTCTAGCAAAGCAACTTGAAGAGTTAATGCCTGGATTATATCATCGCATTGATCGTTGGAATCTTTTAGCTTTATGTCTCTATGGAGTAGGACAAAACCAAAGTGCTTTGGATCTATTTAGGAAATCTTTGCACAAACATGAGAGACCAAATGATGTTGAATCATTGTTAGTAGCTTCCAGGATCTGCAGTGAGGATCCTTATCTTGCTGCTGAGGGAGTAGGGTATGCACAAAGGGGAGTCAATAATGCTAAGGGAATAAAAGAGCATTTAAAAGGTGTGTGTCTTAGAATGTTGGGAATTTGTCTGGGAAAGCAAGCTAAGGTTGCTTCCTCGGACTTTCAAAGGTCTAATCTTCAGTCCAAAGCTCTGAAATCATTGGAAGCGGCAATGGGACTTGAGTATAACAATTCTGATCTGATTTTTGAGCTGGGAGTTCATTATGCAGAACACAGAAATTTGACAGCTTCTTTGCGCTATGCGAAGCAGTTCTTTGATGAAACAGGAGGATCTATTTTGAAAGGTTGGAGATTGATTGCTCTGGTTTTGTCTGCTCAACAACGATTCCCGGAGGCTGAAGTGGTGATAAATGCTGCTTTAGATGAGACTGCAAGATGGGAGCAGGGGCCACTGCTTAGACTGAAAGCAAAGCTCAAGATTTTCCAATCACAACCAATGGATGCTATTGAAACTTATAGATACCTCCTTGCATTGATTCAGGCTCAAAAGAATTCCTTTGGGCCTATGAAAATAAATACACAGGTTCAAGATGATGTGAAGGAAATTGATGTTTGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCATTGGAAGGATGCTGAAGTTTGTCTGCAAAAGGCCAGAGAATTGAAGGAGTACTCAGCAGAGACAGTGCACATTGAAGGCAAGAACAAAACCTCAAGACGTGGACAAAAACAAGAAGCTGTTTCTGCTATCACGACAGGACTCCTGTATGGACCATACTATGTTCCAAGCAAGATCCAGATGGGTGTTTTGCTGCTGAAATTGGATTCAAAGTCAAAATCTGTGCCTTTAGCCAGAAGCTTGCTTTCTGATGCACTTCGATTGGAACCCACTAACCGCACGGCTTGGTTTCACTTGGGAAAAGTTCACAAGTATGATGGCCGAACAGGTGATGCTGCTGACTGCTTCCAGGCAGCTTCCATGCTTGAAGAATCTGATCCTGTTGAGAGTTTCAGCACTTTGCTTTGA 2094 0.4346 MMEKSKNGRPSGGREFYANGNRMNTEEVEAKLNQGDVEAAESALKEGLSITSEEARSLIGKLEYQRGNYASALRVFDGVDLQAALQQLQSLVSDISAAKKACEAPTSIPRHAASLMLESIYFKAKTLRKQGKIAEATAECKNVHEGIEKTFNQGVSDIQLDYTLQEVVSGIVGLLPELTKQAGSYQEALSAYRRALQLLSQWNIDTDGCARVQKGLAKLLLYGGFEASTPKATDQGEGFYVPKNNLEEAILLLMLAVRRLCVDKSKWDPSVMEHLTFALSVCGQTSVLAKQLEELMPGLYHRIDRWNLLALCLYGVGQNQSALDLFRKSLHKHERPNDVESLLVASRICSEDPYLAAEGVGYAQRGVNNAKGIKEHLKGVCLRMLGICLGKQAKVASSDFQRSNLQSKALKSLEAAMGLEYNNSDLIFELGVHYAEHRNLTASLRYAKQFFDETGGSILKGWRLIALVLSAQQRFPEAEVVINAALDETARWEQGPLLRLKAKLKIFQSQPMDAIETYRYLLALIQAQKNSFGPMKINTQVQDDVKEIDVWHGLANLYASLSHWKDAEVCLQKARELKEYSAETVHIEGKNKTSRRGQKQEAVSAITTGLLYGPYYVPSKIQMGVLLLKLDSKSKSVPLARSLLSDALRLEPTNRTAWFHLGKVHKYDGRTGDAADCFQAASMLEESDPVESFSTLL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1128 697 Gene3D Tetratricopeptide repeat domain 455 586 IPR011990 GO:0005515
Lele54g1128 697 SMART tpr_5 548 581 IPR019734 GO:0005515
Lele54g1128 697 SMART tpr_5 459 492 IPR019734 GO:0005515
Lele54g1128 697 SMART tpr_5 169 202 IPR019734 GO:0005515
Lele54g1128 697 SMART tpr_5 655 688 IPR019734 GO:0005515
Lele54g1128 697 SMART tpr_5 303 336 IPR019734 GO:0005515
Lele54g1128 697 Gene3D Tetratricopeptide repeat domain 174 454 IPR011990 GO:0005515
Lele54g1128 697 Gene3D Tetratricopeptide repeat domain 8 162 IPR011990 GO:0005515
Lele54g1128 697 SUPERFAMILY TPR-like 494 629 IPR011990 GO:0005515
Lele54g1128 697 SUPERFAMILY TPR-like 181 685 IPR011990 GO:0005515
Lele54g1128 697 MobiDBLite consensus disorder prediction 1 22 - -
Lele54g1128 697 Gene3D Tetratricopeptide repeat domain 587 694 IPR011990 GO:0005515
Lele54g1128 697 PANTHER PROTEIN NPG1 13 694 IPR043376 -
Lele54g1128 697 Coils Coil 81 101 - -
Lele54g1128 697 SUPERFAMILY TPR-like 297 450 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1128 Lele-ChrLele54 17088575 17092081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1128 5 697 Calmodulin-binding Proteins AT2G43040 61.318 0.0 842