Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1105 ATGGCAGCTTCTTGCGCAGTGTACACAACAACACAATCTCTCAACACAAAAAGCTCCATCTCATCTCTATCAAAATCACATTTGGTTTATTTTTGCCAGAAACATGAGCAGCTAGTTATCTTCAGGGGAAGAACAAGAAGAAGAAGCAGCAGTCCATGTGTGATAACATGTGGTGCAGTAGCAGGAGATCATGATCAGACGGTTGTGATTGGTCTTGCTGCAGATTCAGGCTGTGGGAAGAGCACATTCATGAGAAGACTAACAAGTGTGTTTGGAGGAACAGCAGAACCACCAAAAGGAGGGAATCCAGATTCCAACACTCTCATTAGTGACACAACAACAGTTATTTGCTTAGATGATTATCATTCATTGGACAGAAACGGAAGAAAAGAGAAAGGAGTCACAGCACTAGATCCAAGAGCCAACAATTTTGATCTCATGTATGAACAAGTTAAGGCAATTAAGGATGGAACTGCTGTGGAAAAACCCATTTATAATCATGTCACTGGTCTCTTGGATCCTCCTGAGCTCATAAAGCCTCCCAAAATCTTAGTCATTGAAGGTTTGCATCCAATGTTTGATTCTCGGGTGAGAGAACTGTTGGACTTCAGTATCTACTTGGACATCAGCAATGAAGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGCCTTGAAAGCATCAAAGCTAGCATTGAAGCTCGGAAGCCTGATTTTGAAGCCTTTATTGATCCTCAGAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACTCAGCTCATTCAAAATGATAATGAAGGAAAGATTTTAAGAGTGAGGTTAATACAGAAAGAAGGGGTTAAGCATTTTAGCCCTACTTACTTGTTTGACGAAGGATCTACCATTTCCTGGATACCATGTGGCAGGAAGCTCACTTGCTCTTATCCTGGCATTAAGTTCTTCTATGGACCAGAGACTTACTATGGCAATGAGGTATCAGTTGTGGAGATGGATGGGCCATTTGACAAACTAGATGAACTGATATATGTTGAGAGCCATCTTAGTAACCTCTCAACAAAATTCTATGGGGAGGTCACACAACAGATGTTGAAACATGCTGATTTCCCAGGAAGCAACAATGGCACAGGTCTTTTCCAAACCATAATTGGTTTGAAGATTAGAGATTTATATGAGCAAATAATAGCCAGCAGGGCCAAGACTCCAGTAGGAGCAGCTCAAGCCTAG 1242 0.4179 MAASCAVYTTTQSLNTKSSISSLSKSHLVYFCQKHEQLVIFRGRTRRRSSSPCVITCGAVAGDHDQTVVIGLAADSGCGKSTFMRRLTSVFGGTAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRNGRKEKGVTALDPRANNFDLMYEQVKAIKDGTAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAFIDPQKQYADAVIEVLPTQLIQNDNEGKILRVRLIQKEGVKHFSPTYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPETYYGNEVSVVEMDGPFDKLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIIGLKIRDLYEQIIASRAKTPVGAAQA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1105 413 Pfam Phosphoribulokinase / Uridine kinase family 69 267 IPR006083 GO:0005524|GO:0016301
Lele54g1105 413 PRINTS Phosphoribulokinase family signature 74 91 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele54g1105 413 PRINTS Phosphoribulokinase family signature 236 259 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele54g1105 413 PRINTS Phosphoribulokinase family signature 218 235 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele54g1105 413 PRINTS Phosphoribulokinase family signature 183 201 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lele54g1105 413 Gene3D - 64 290 IPR027417 -
Lele54g1105 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 337 IPR027417 -
Lele54g1105 413 CDD PRK 69 358 - -
Lele54g1105 413 FunFam Phosphoribulokinase 64 294 - -
Lele54g1105 413 PANTHER URIDINE KINASE 65 311 - -
Lele54g1105 413 ProSitePatterns Phosphoribulokinase signature. 218 231 IPR006082 GO:0005524|GO:0005975|GO:0008974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1105 Lele-ChrLele54 16919497 16922561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1105 63 259 PRT Gene Family AT1G55810 26.961 6.78e-15 74.3