Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1103 ATGGAGATACTAAAAACCCAGACATCATCGTGGTTCTATTTGGCGCTGGTTCGCGCGGCTCTGGGATCTGCGGGAGTTGCCTACAGTTTCAGGCTTTCAGCTTCAACCATGGGCAAGAAGCATCATGATGACGCCAGAGTCAGCGAGCCAGTAGCCGAGGAAGCCCCCGACTACTCGGCAATCGAAGCAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGATAAGCGAAACGAAGATAGTCCCAAAAGAAAGCTCGAGGAAGTTCAGGTCCAGGATAGCGCAGAACCGAAAACGAAGAAGAGTAAGAAGGATAAGAAGTCGAAAAAAAGCTCGGAGGAAACCGTAACCGTCGAAACAAATGACGCCGAGAACGGTGGAGAGGGCGACTCGGTGAGAGATGGGCACGTTGTGGTTACTGGAACGAATATTAAGGATGAGAAGTATGCGCCCACCAAGGCTTTCTCCGAATCGGGGCTTCCAAAGGAAGTCTTGGAATGCTGCAAAAGTTTTGAAAAGCCGTCCCCTATTCAGTCCCGAGCGTGGCCTTTCTTGTTGAATGGTCGTGATTTAATTGGCATTGCTGCTACTGGATCAGGAAAAACATTAGCTTTTGGAATACCGGCTATGATGCATGTTATGAGCAAGCGCAAGATTAAAGCGTCAAAGGGTCGGAATCCTCTCTGCCTTGTGCTCTCTCCTACCAGGGAGCTGGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGGAGGTCTTGTGGTGTGGAATCTATATGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCTTCGTTAAAATCTGGTGTTGACATCGTCATTGGAACTCCTGGTCGTATAAAGGATCTGATTGAAATGGGTGTTTGTTCTTTGAAAGAGGTTTCGTTTGTGGTGCTTGATGAAGCTGATCGAATGCTTGACATGGGATTTGAACAAATAGTTCGCTCCATACTGGGTCAGACTTGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTCTACCAGTCCATAACTTAGCTCAAGAGTTTATGGATCCTAACCCTGTGAAAGTTGTTGTAGGATCAGAGGACTTAGCTGCCAATCATGATGTTATGCAGATAGTTGAGGTCTTGGATGATCGTGCACGAGATAAGCGCCTGGTTGCTTTGCTAGAAAAGTACCACAAATCTCAGAGGAATAGAGTATTGGTTTTTGTCTTGTACAAATTGGAAGCCACGCGAGTCGAAAAGATGCTTCATCAAGGGGGTTGGAAGGTTGTCTCTATACATGGGGACAAGGCACAATATGAACGTACGAAGTCACTGTCGTTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCCACTGATGTGGCTGCACGGGGATTGGATATTCCGGATGTCGAAGTTGTGATCAACTACAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGAGAACTGGACGAGCTGGGAAGAAAGGTGTTTCGCATACGTTCTTCACGCAGCAGAATAAGGGACTTGCTGGGGAGCTAGTGAATGTTTTAAGAGAAGCAAATCAAATAGTGCCTGGTGATCTTTTGAAATTTGGCACGCATATAAAGAAAAAGGAGTCCAAGCTGTACGGAGCTCACTTCAAGGAGATTTCTGCTGATGCTCCGAAGTCAAAGAAGACAACATTTGACGACTCTGACGAAGATTAA 1713 0.4559 MEILKTQTSSWFYLALVRAALGSAGVAYSFRLSASTMGKKHHDDARVSEPVAEEAPDYSAIEAEKKKKKKKKKDKRNEDSPKRKLEEVQVQDSAEPKTKKSKKDKKSKKSSEETVTVETNDAENGGEGDSVRDGHVVVTGTNIKDEKYAPTKAFSESGLPKEVLECCKSFEKPSPIQSRAWPFLLNGRDLIGIAATGSGKTLAFGIPAMMHVMSKRKIKASKGRNPLCLVLSPTRELAQQISDVMCDAGRSCGVESICLYGGTSKGPQISSLKSGVDIVIGTPGRIKDLIEMGVCSLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHNLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLVALLEKYHKSQRNRVLVFVLYKLEATRVEKMLHQGGWKVVSIHGDKAQYERTKSLSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLREANQIVPGDLLKFGTHIKKKESKLYGAHFKEISADAPKSKKTTFDDSDED 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1103 570 SMART helicmild6 414 495 IPR001650 -
Lele54g1103 570 Gene3D - 362 536 IPR027417 -
Lele54g1103 570 Coils Coil 58 78 - -
Lele54g1103 570 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 178 IPR014014 GO:0003724
Lele54g1103 570 CDD DEADc 170 359 - -
Lele54g1103 570 CDD SF2_C_DEAD 372 504 - -
Lele54g1103 570 MobiDBLite consensus disorder prediction 36 51 - -
Lele54g1103 570 Pfam Helicase conserved C-terminal domain 386 495 IPR001650 -
Lele54g1103 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 508 IPR027417 -
Lele54g1103 570 MobiDBLite consensus disorder prediction 36 135 - -
Lele54g1103 570 Pfam DEAD/DEAH box helicase 175 344 IPR011545 GO:0003676|GO:0005524
Lele54g1103 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 534 IPR001650 -
Lele54g1103 570 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 94 530 - -
Lele54g1103 570 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 304 312 IPR000629 -
Lele54g1103 570 FunFam ATP-dependent RNA helicase RhlB 361 538 - -
Lele54g1103 570 Gene3D - 94 361 IPR027417 -
Lele54g1103 570 SMART ultradead3 169 375 IPR014001 -
Lele54g1103 570 MobiDBLite consensus disorder prediction 78 116 - -
Lele54g1103 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 358 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1103 Lele-ChrLele54 16900894 16905453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1103 150 524 Eukaryotic Initiation Factors Gene Family AT3G19760 32.095 3.38e-55 190