Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1088 ATGTCGCCTTCCTCCTCGTCTCTGCTGAATCCTCAAGCTCACAAAATCCTCTATCCTCTTACCATTTTCCCTTATTCTGCTTCTCCACGCAAATTTTGCTCTTTACGAACTGTAAAGTTTCTAAGGAAGCTTCCTTCTCCGCGACTAGCTTTTCAGTCATCCAATGAGGTTCATGTTGACGACCTGGAAGAACATGTTATTGGCGACTGTGTCGTCTTCGAAGACGGCATATTCGAAGACCCAGTTCTTCAGGAAGACCCGAACATAGATAATTCCGGCATAGATAATTTGAAACCTAAATCGAAGAAAAATGTCCCAGAGATTGTGCCTGAGAATTTGGTCCCCGACCGGTGGAGAGAAGCTCAGGCGGAGATCAACATCACGAAGAAGGAGAGGCGCAAGATTGCTCAGGAAATTGAATTCAATAGCAGGGTCGATAAGAAGAAACAAGGGATGATTCCCCTGAGGCGTATGAACCTGGAAGACTATAAGGCGTACAAGGAGGCCAAATTGGCTCAGCTGAAGCCCTTGGTTCTCGAAAACCCTTCGAGCTTTCCGTTGAAGGAGGAGGTTCCCGTTAGAAAAGAAGTTGATGTGAGTAATGAGTCTGCTTGTGAACGCGTAGTGCCTAAGAATCCTAGGTGGGCAGTTTACGGCCGGGGTTTGGAGGACGTTTCAGAGTTTTTCAGTAGTGAGAATTACGATCCTAGTAAAAAGAATACCGAAGGTCAAGGCCGTCGTAAGTTATTTACGAAGGAGGAGAAGGTTTTATTGAGTAAGCGGATACCAGATTTGGCGGCTGCAACTTCTGAGAAATGGCTGCCTCTGCACACTCTTGCTGCATGTGGAGAATTTTACCTTTCAGATTCTTTGTTGAAACATAATGTCGATATCAATGCTGTTGATAAGGATGGCTTGACTGCTCTTCACAAGGCCATAATTGGTAAAAAGCAGGCCATAACCAACTACCTTCTGAGAAATTCAGCTAATCCATTCATACTTGATAAAGAGGGGGCAACCTTGATGCACTATGCTGTACAGACAGCTTCCAGCCAGACGATTAAAATCCTTCTACTATATAATGTTGATATAAATCTTCAGGACAATGATGGGTGGACACCCTTACATGTCGCCGTTCAAGCCCGAAGAACTGATGTAGTGAGGCTTCTACTTGTTAAAGGTGCTGATAAGACAATAAAAAACAAGGATGGTTTAACTCCCCTTGAACTTTGCCTTCATTCTGGTCAAGACTTGAGGACATATGAGCTAATCAAGCTGTTGAAGCAGCTTCCAAGGCGTTAG 1302 0.4439 MSPSSSSLLNPQAHKILYPLTIFPYSASPRKFCSLRTVKFLRKLPSPRLAFQSSNEVHVDDLEEHVIGDCVVFEDGIFEDPVLQEDPNIDNSGIDNLKPKSKKNVPEIVPENLVPDRWREAQAEINITKKERRKIAQEIEFNSRVDKKKQGMIPLRRMNLEDYKAYKEAKLAQLKPLVLENPSSFPLKEEVPVRKEVDVSNESACERVVPKNPRWAVYGRGLEDVSEFFSSENYDPSKKNTEGQGRRKLFTKEEKVLLSKRIPDLAAATSEKWLPLHTLAACGEFYLSDSLLKHNVDINAVDKDGLTALHKAIIGKKQAITNYLLRNSANPFILDKEGATLMHYAVQTASSQTIKILLLYNVDINLQDNDGWTPLHVAVQARRTDVVRLLLVKGADKTIKNKDGLTPLELCLHSGQDLRTYELIKLLKQLPRR 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1088 433 Gene3D - 339 428 IPR036770 -
Lele54g1088 433 FunFam Ankyrin repeat domain-containing protein, chloroplastic 342 433 - -
Lele54g1088 433 ProSiteProfiles Ankyrin repeat profile. 304 336 IPR002110 GO:0005515
Lele54g1088 433 ProSiteProfiles Ankyrin repeat profile. 337 369 IPR002110 GO:0005515
Lele54g1088 433 Pfam Ankyrin repeats (many copies) 275 317 IPR002110 GO:0005515
Lele54g1088 433 Gene3D - 222 338 IPR036770 -
Lele54g1088 433 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 179 428 - -
Lele54g1088 433 SUPERFAMILY Ankyrin repeat 263 416 IPR036770 -
Lele54g1088 433 FunFam Ankyrin repeat domain-containing protein, chloroplastic 244 341 - -
Lele54g1088 433 ProSiteProfiles Ankyrin repeat region circular profile. 337 369 - -
Lele54g1088 433 ProSiteProfiles Ankyrin repeat region circular profile. 370 402 - -
Lele54g1088 433 SMART ANK_2a 304 333 IPR002110 GO:0005515
Lele54g1088 433 SMART ANK_2a 271 300 IPR002110 GO:0005515
Lele54g1088 433 SMART ANK_2a 370 399 IPR002110 GO:0005515
Lele54g1088 433 SMART ANK_2a 337 366 IPR002110 GO:0005515
Lele54g1088 433 Pfam Ankyrin repeats (3 copies) 320 401 IPR002110 GO:0005515
Lele54g1088 433 ProSiteProfiles Ankyrin repeat profile. 370 402 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1088 Lele-ChrLele54 16815325 16817883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1088 324 421 Ion Channels AT2G25600 29.703 1.71e-07 51.6