Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1082 ATGGAGCTATTTCCAGCACATCCTGATTTGTCTTTGCAGATTAGTCCTCCTAACACAAAACCCACATCGGGATGGAGAAGTAGTGGGACACATCATCATCAAGCTCAGCTTGATTTGGGTTTCTGGAAGAGAGCTTTGGAAACCAGAAGCTCATTGCTTTCTTCTTCTTCAATGCCTAAAGCAACTGACAGTCCTAACTTCTTTGACCTTTCACTCTCCAATAATAACCCAGCAGCTCCTTCTTCTACTACTACATTCACAACGCCTTCTTCAATTTCTTCCTCCTCAGAGCATATCAGCTTCCAAAACGCTCCGTTTCAACACCCCCAAGACCTGGGATTTCTCAGACCCATCCGAGGAATCCCAGTGTACCAGAACCTTCCTCATCATCATCATCCTCATCCAGCGGCAACTACGCCTCTTCCTTCTTCTTTCTTTCAAGTTCATCAGAATCTGCAGGATGCTTCTATTTCAGCTGCAGTGAACAACACGACGGCCACCACCCCTTTTCCTTTTCACCATCAGCATCATCATATTCAAGGTTTGATGAGGTCGAGGTTCTTGTCTCATCGCTTCCCTACCAAACGCAGCATGAGAGCTCCCAGGATGCGTTGGACTACCACCCTCCATGCTCGCTTTGTTCATGCCGTTGAGCTTTTGGGTGGCCACGAAAGTATCCTTCTTTTCCTACTTCTTCTTTTACTTTCCCCCCTTCTTACTTACACCCATCATCAATTTCACTTTCTTCTACTTCTTCTACATATTATTAATCTTGTAATACCGTTTGGGCTTTTAGGGGCTACACCCAAATCCGTTCTCGAGCTAATGGATGTGAAGGATCTTACTTTAGCCCACGTTAAATCTCATTTACAGATGTATCGGACGGTGAAAACCACAGATAGAGCAGCAGCTTCTTCTACAGGCCAATCAGATGGGTATGATAATGGATCATCTGGGGATACTTCTGAAGAATTAATGTTTGACATGAACAATAATCTGAGAAGATCCGATCTATCTCCTAAGCAGGGAAGGCAAAGTGTTCATCAAGAAAAGGAATATCATCATGGCCTTTGGAGCAACTCTTCGAGAGAAGCTTGGTTGCATGGAAAGCCAAAGGAGATTGATTCTGTTGGAAACAACAATGTTAGTTCTCTTGAGAAAGAGAGAATATCAGATGGAAGCTCATCGTCATACATTTCAGGATCAAGCCCTAAGAAGCCTAATCTTGATTTGGAGTTCACTTTGGGACAGCCGATAATATGA 1263 0.4378 MELFPAHPDLSLQISPPNTKPTSGWRSSGTHHHQAQLDLGFWKRALETRSSLLSSSSMPKATDSPNFFDLSLSNNNPAAPSSTTTFTTPSSISSSSEHISFQNAPFQHPQDLGFLRPIRGIPVYQNLPHHHHPHPAATTPLPSSFFQVHQNLQDASISAAVNNTTATTPFPFHHQHHHIQGLMRSRFLSHRFPTKRSMRAPRMRWTTTLHARFVHAVELLGGHESILLFLLLLLLSPLLTYTHHQFHFLLLLLHIINLVIPFGLLGATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSTGQSDGYDNGSSGDTSEELMFDMNNNLRRSDLSPKQGRQSVHQEKEYHHGLWSNSSREAWLHGKPKEIDSVGNNNVSSLEKERISDGSSSSYISGSSPKKPNLDLEFTLGQPII 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1082 420 MobiDBLite consensus disorder prediction 333 355 - -
Lele54g1082 420 Gene3D - 200 298 - -
Lele54g1082 420 MobiDBLite consensus disorder prediction 1 30 - -
Lele54g1082 420 MobiDBLite consensus disorder prediction 371 409 - -
Lele54g1082 420 SUPERFAMILY Homeodomain-like 263 295 IPR009057 -
Lele54g1082 420 MobiDBLite consensus disorder prediction 376 404 - -
Lele54g1082 420 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 418 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lele54g1082 420 MobiDBLite consensus disorder prediction 12 30 - -
Lele54g1082 420 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 263 295 IPR006447 GO:0003677
Lele54g1082 420 MobiDBLite consensus disorder prediction 301 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1082 Lele-ChrLele54 16760473 16764410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1082 1 418 G2-like Transcription Factor Family AT4G17695 34.499 7.74e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele54g1082 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1082 54 16760473 16764410 Lele55g0373 55 2324401 2328317 hybridization
Lele54g1082 54 16760473 16764410 Lele56g0362 56 2742732 2746663 hybridization