Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1080 ATGAGCCAAGCCGTGTCCGAGTGGGCCGATGAAACGACAAGCTAGGGCTTTGCATCTCTCTGTTGTCTGGTTTCAGCCTTGTGCTCGGCTTTCTGCGAGAATGTGGCGAGTCTAGTTGTTGTCGAAGGCTCGCTTTTAATCTATAAAATCCAGGATCGTGATCTAGGGTTTGGCTCTGGGATTTGGATTCAGTTTTGTCATTGTTTTTGTGATTTCTTGACCAAGTGGCCGAAGACTGAGGTCTACAGGGAGCTACCTCGGGATGAAATGGTGGAAGGAAGAGTTTGTTTGCCCAAGGAAGCTAGAAATGTATTAGAATCTTTGAAGCGTAAAAGGCTTCACCGAGCAAAATCTTCAATTGCCGATAAGACAAGTGTTGCTAATATGTTGACAAGAAGCGGAGGAGATGCTTTAAGGGCTTCGTCATCATGTGGTATGAGATTGCATGGTAATGCAGATGCCTTTTCCAAGCGGAAGGTGGATAAGTTTGACATGAGCGATCTAGAATGGACAGAGAAAATTCCCGAGTGTCCTGTGTACTCCCCAACAAAGGAGGAATTTGAGGACCCTTTGGTTTATTTGCAAAAGATAAGTCCTGTGGCTTCAAGATATGGTATATGCAAGATTATTTCTCCATTGAGTGCTTCAGTTCCTGCTGGAGTTGTTTTAATGAAGGAGAAAGCAGGATTTAAGTTTGCAACTAGAGTACAGCCACTTCGCCTTGCTGAGTGGGATACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGAAATTATACATTTCGCGATTTTGAAAAAATGGCGAACAAGGTTTTTGAACGTAGATATTGCAGTGCTGGATGTCTTCCTGCCTCATTTTTGGAAAAAGAGTTTTGGCATGAAATTAGCTGTGGAAAGATGGAAAGTGTAGAATACGCATGTGACGTAGATGGTAGTGCCTTTTCCTCTTCTCCCAATGATCAACTTGGGAGCAGCAAATGGAATTTGAAGAAGCTTTCTCGGCTGCCCAAATCCATTTTGCGACTCTTGGAAACAGTAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTTGAGGATCACTATTTGTACAGTATTAATTATCATCACTGTGGGGCACCAAAAACTTGGTACGGAATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTAAGAGGACATGTGTATACTAATAATATTCTGTCAAGTGAAGGGGAAGATGGAGCCTTTGATGTTCTTCTGGGGAAAACAACTTTGTTTCCTCCAAATATTTTGTTGGAACATGAAGTGCCGGTCTATAAAGCTGTTCAGAAACCGGGAGAGTTTATTGTTACCTTTCCTAGAGCGTATCATGCTGGTTTTAGTCATGGTTTTAACTGCGGTGAAGCAGTGAATTTTGCCATTGGTGATTGGTTTCCTATAGGGGCCACTTCCAGCAGGCGATATGCACATCTAAACAGGGTTCCTCTGCTACCTCACGAAGAACTTTTATGCAAAGAAGCAATGCTCCTCTATACAAGTTTAGAACTTGAAGACTCAGATTTTCCTTCCTCAGATTCGATGTTTCATAATAGCATCAAGATCTCTTTTGCTAATTTGATGCGCTTCCAGCATTGTGCTCGCTGGTTCTTAATTAAATCAGGGGTGTACACAAATGTTTCTTCACACTCCCATGGCTCAATTCTCTGTAGTCTCTGCAAACGTGACTGCTATGTAGCATATGTTGACTGCGACTGTCACATGCATCCAGTGTGTCTTCGCCATGATATCGAATCTCTTGACTTCACCTGTGGGAGTAAACACACTCTTTACTTGAGGGAGGATATTGAAGATATGGAAGCTGCGGCCAAGAGGTTTGAGCAGGAAGATGGTATATTGGATGAGATAATTAAGCAGATCAAGGCTGACAATAACATGTATTCCTATCCCTTGTCAAATATGTTTCACAGAGCTGAGGCCGATGGATATACCCCTTATTGCGAGATAAAACTTGATTCTGTTATTGAATCTTCTTACCATGGCTCAGATCAGTTAATGAATATTCAAGAGTGTGCGATTCAAAGTCAATGGGCTTTGAGGTATTGCTCAGGGTCAGAATATCACAAATCCGAAGTGTCTGATGTTTCCTTCTTTTCTGCTGCTTCTGCTCTTTGCTCTCTTTCGGACCCTCTTGAGAGTTATTCTTCTACTATTAAAAATGATGAGGGGCGTGCAAACTCCGGCATTGTTAATTCTGAAGAGCTTTGTGAAAGAGTGTCCAATAGTGCATGTGAATCTTCAGTATCCCCTTCACGGAATCACGACAGCTCGATTAAACCTCAGGGTGGCGATCTTAATAGATTAGAGATGAAATCCATGGTGAATAATGACACTGATGATTCTGATTCAGAGATATTTAGGGTAAAGCGGCCTTCTTCTTTGAAGGCAGAGAGGAGAAATGGGAATGACGGGATGTGGACTAAAACGATTGAAGAAAAACTCGGAAGAAGAAGTGGGCAACTAATAGATTACAGCAAAAGCAGTGAATCAAGTTCCAACAAGTGGAGGCAACCAGCAAATCAGAAAACTGATAGTGAAAGCTGTTCGAGGGAAAGATTTGCGAAGGCTAATAATGGCATTCCCATTTCCATAAGGTACAAGAAAGTAGGAAACAACGAGGGCCTGAGTGGACAAGGAGATCACCACAAGAGAAATAGGATGCAACAGAGTATGATGGAACCATCATCTGCCACAGAGATCGGTATTGGACCGAAGCGGCTTAAAGTGCGAGGCCAATCATTCCTGAGTTTATAG 2826 0.4243 MSQAVSEWADETTSXGFASLCCLVSALCSAFCENVASLVVVEGSLLIYKIQDRDLGFGSGIWIQFCHCFCDFLTKWPKTEVYRELPRDEMVEGRVCLPKEARNVLESLKRKRLHRAKSSIADKTSVANMLTRSGGDALRASSSCGMRLHGNADAFSKRKVDKFDMSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKISPVASRYGICKIISPLSASVPAGVVLMKEKAGFKFATRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFERRYCSAGCLPASFLEKEFWHEISCGKMESVEYACDVDGSAFSSSPNDQLGSSKWNLKKLSRLPKSILRLLETVIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGAPKTWYGIPGHAALEFERVVRGHVYTNNILSSEGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPIGATSSRRYAHLNRVPLLPHEELLCKEAMLLYTSLELEDSDFPSSDSMFHNSIKISFANLMRFQHCARWFLIKSGVYTNVSSHSHGSILCSLCKRDCYVAYVDCDCHMHPVCLRHDIESLDFTCGSKHTLYLREDIEDMEAAAKRFEQEDGILDEIIKQIKADNNMYSYPLSNMFHRAEADGYTPYCEIKLDSVIESSYHGSDQLMNIQECAIQSQWALRYCSGSEYHKSEVSDVSFFSAASALCSLSDPLESYSSTIKNDEGRANSGIVNSEELCERVSNSACESSVSPSRNHDSSIKPQGGDLNRLEMKSMVNNDTDDSDSEIFRVKRPSSLKAERRNGNDGMWTKTIEEKLGRRSGQLIDYSKSSESSSNKWRQPANQKTDSESCSRERFAKANNGIPISIRYKKVGNNEGLSGQGDHHKRNRMQQSMMEPSSATEIGIGPKRLKVRGQSFLSL 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1080 941 SMART JmjN_1 176 217 IPR003349 -
Lele54g1080 941 MobiDBLite consensus disorder prediction 770 871 - -
Lele54g1080 941 Pfam JmjC domain, hydroxylase 354 477 IPR003347 -
Lele54g1080 941 PANTHER LYSINE-SPECIFIC DEMETHYLASE 169 876 - -
Lele54g1080 941 SUPERFAMILY Clavaminate synthase-like 255 510 - -
Lele54g1080 941 SMART cupin_9 324 494 IPR003347 -
Lele54g1080 941 Pfam C5HC2 zinc finger 574 625 IPR004198 -
Lele54g1080 941 MobiDBLite consensus disorder prediction 797 843 - -
Lele54g1080 941 Pfam jmjN domain 178 210 IPR003349 -
Lele54g1080 941 Gene3D Cupin 177 536 - -
Lele54g1080 941 MobiDBLite consensus disorder prediction 770 784 - -
Lele54g1080 941 FunFam Lysine-specific demethylase isoform A 172 521 - -
Lele54g1080 941 ProSiteProfiles JmjN domain profile. 177 218 IPR003349 -
Lele54g1080 941 MobiDBLite consensus disorder prediction 845 868 - -
Lele54g1080 941 ProSiteProfiles JmjC domain profile. 324 494 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1080 Lele-ChrLele54 16739134 16747081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1080 174 644 JUMONJI Transcription Factor Family AT2G34880 31.892 5.90e-65 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele54g1080 JmjC 8.9e-39 CL0029