Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele54g1074 | ATGAGCTTTCAGGATATCGAAGCTGGCCGGCCATTCGCTCCCCGGCGAAACCTTGGCAATCCCAACCAAGATCCTACCCAGGCCGTGGCTTCCGGTATCTTTCAGATCAACACCGCTGTTTCCACGTTTCAGAGGCTCGTCAATACCCTTGGAACCCCGAAAGACACGCTAGAGCTGCGCGAAAAATTGCACAAGACAAGACTACATATTGGGCAATTAGTGAAGGACACATCTGCCAAACTCAAGCAAGCTAGTGAAATAGATCACCATGTTGAAGTTAGTGCAAGTAAGAAGATAGCCGATGCTAAACTTGCAAAAGATTTTCAGGCAGTTCTGAAAGAATTTCAGAAGGCACAGCAGCTTGCAGCCACAAGGGAAACAACCTACACTCCTTTCGTTTCACAAGCAAGTCTTCCTTCCAGTTATACAACCAGCGAGGGGGATGTTAGTTCTGATAAGACTTCAGAACAGCGTGCTCTTCTTGTGGAATCCAGAAGGCAAGAGGTGTTATTATTGGATAATGAGATTGCCTTCAATGAAGCTATAATTGAGGAACGAGAGCATGGCATTCAAGAAATCCAACAACAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCCATGATTGATGATATTGGATCCAATATTGAAGCCTCCCATGCGGCAACTTCAGAAGCAAAAACTCAACTTTTGAAAGCTGCAAAGACCCAAAGATCAAATTCGTCTCTGACGTGCTTGCTCTTGGTGATATTCGGGGTCGTGCTCCTCATCGTGATCATAGTTCTTGCTGCCTAG | 822 | 0.4513 | MSFQDIEAGRPFAPRRNLGNPNQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTLELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHVEVSASKKIADAKLAKDFQAVLKEFQKAQQLAATRETTYTPFVSQASLPSSYTTSEGDVSSDKTSEQRALLVESRRQEVLLLDNEIAFNEAIIEEREHGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEASHAATSEAKTQLLKAAKTQRSNSSLTCLLLVIFGVVLLIVIIVLAA | 273 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele54g1074 | 273 | PANTHER | SYNTAXIN | 26 | 264 | IPR045242 | - | |
| Lele54g1074 | 273 | FunFam | Syntaxin-22 like | 173 | 273 | - | - | |
| Lele54g1074 | 273 | SMART | SynN_4 | 13 | 127 | IPR006011 | GO:0016020 | |
| Lele54g1074 | 273 | CDD | SNARE_Qa | 183 | 241 | - | - | |
| Lele54g1074 | 273 | FunFam | Syntaxin-22 like | 20 | 133 | - | - | |
| Lele54g1074 | 273 | Pfam | Syntaxin-like protein | 30 | 129 | IPR006011 | GO:0016020 | |
| Lele54g1074 | 273 | SUPERFAMILY | t-snare proteins | 23 | 235 | IPR010989 | GO:0016020|GO:0016192 | |
| Lele54g1074 | 273 | Gene3D | - | 20 | 135 | - | - | |
| Lele54g1074 | 273 | Pfam | SNARE domain | 217 | 268 | IPR000727 | - | |
| Lele54g1074 | 273 | ProSitePatterns | Syntaxin / epimorphin family signature. | 186 | 225 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Lele54g1074 | 273 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 180 | 242 | IPR000727 | - | |
| Lele54g1074 | 273 | SMART | tSNARE_6 | 175 | 242 | IPR000727 | - | |
| Lele54g1074 | 273 | Gene3D | - | 155 | 273 | - | - | |
| Lele54g1074 | 273 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Lele54g1074 | 273 | CDD | SynN | 23 | 146 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele54g1074 | Lele-ChrLele54 | 16709317 | 16711882 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele54g1074 | 1 | 261 | SNARE and Associated Proteins | AT5G46860 | 77.395 | 1.28e-141 | 397 |