Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1070 ATGAACGGAGTTAATAACAGCAGCTCCGGCGGCGGCACGCCGACGCCAGCTCCGGTTCCCATTCCTAATACCAACGCGCCTCCGCCCTTTCTTAGTAAGACATATGACATGGTGGATGACCCGTCCAGTGATGCGATCGTTTCTTGGAGCTCAACCAACAATAGCTTTGTGGTTTGGAACCCCCCCGAGTTTGCCAGGGACCTTTTGCCTAACTACTTTAAGCACAATAACTTCTCCAGCTTTGTTAGGCAGTTGAATACATATGGTTTCAGGAAGGTCGATCCAGATCGATGGGAATTTGCTAATGAGGGCTTTTTGAGGGGTCATAAGCACTTGCTTAAGAACATAACCCGGCGAAAACCTGCCCATGGTCATAGTCATCAACAGGCACAACAATCTCATGGGCAGAGTTCATCTGTAGGGCCATGTGTAGAGGTTGGGAAGTTTGGTCTAGAGGAAGAGGTTGAAAGACTCAAAAGAGACAAGAATGTGCTCATGCAGGAGCTTGTGAGGTTGAGACAGCAGCAACAGGCCACTGATAACCAGATGCAACAAATGGTTCAGCGCCTTCAGGGAATGGAACAACGTCAGCAGCAAATGATGTCATTCCTTGCAAAGGCTGTCCAGAGTCCTGGCTTCTTGACTCAGTTCGTACAACAGCAAAATGATAGCAATAGGCGCATAACTGAAGCCAACAAAAAAAGAAGGCTTAAGCAGGAACGTATTGCTGAAACAGAGTGTGCTACTGCTTCTGATGGACAAATTGTTAAGTATCAACCTTTGATGAATGAAGCTGCTAAAGCAATGCTAAGGCAGATCATGAAACTGGATACCCCTTGGCTAGAATCTTTCGATAATAACTCAGACAATTACTTGATTGACAATGGCTCCACATCGTCGGGGGCAATGGACAGTGGCAGCACTTCAAACCGGAGCTGTGGAGTAACCCTTCAAGAGGTCCCCCCAACTTCAGTGAATGCTCCCTCAGCTGGCAAATCTGAAAAACAATCTTCTCCACAGTCTGCAGCTTCTGAAAAGGTTATGACTACTCAATACCCTGATGTAAATGTGCTGGTTGGTGCATCTGAGAAACCTTCTATCCCTGTTTCTGAGGTAGATGTCATGCCCGAGCTTTCTCCGATACCAGAGATGGCAACGGGAAGTATTCTTGATATTCCTGAAGAGAATTATATGGGACCAGAAACAGGAAATGACGGATTCATGGATCCTAACTTATTGGGGGTAAACGGGGCGATGCCCATTGATATTGGTAGTATTTCACCTGATACAGACATTGATGACTTGTTACTCAACTCTTCTTTTTGGGATGACTTAGTGCAAAGTTCACTGCCTGAGGATATCGAGATTGATGCTGCTGATGTGTCCAAGGGAAATGAGGTGCAGCCAGTGGAAAATGGATGTAACAAAGAACATATGGATCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGATGCAAAAAGAGTTTGA 1491 0.4581 MNGVNNSSSGGGTPTPAPVPIPNTNAPPPFLSKTYDMVDDPSSDAIVSWSSTNNSFVVWNPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGHKHLLKNITRRKPAHGHSHQQAQQSHGQSSSVGPCVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQMQQMVQRLQGMEQRQQQMMSFLAKAVQSPGFLTQFVQQQNDSNRRITEANKKRRLKQERIAETECATASDGQIVKYQPLMNEAAKAMLRQIMKLDTPWLESFDNNSDNYLIDNGSTSSGAMDSGSTSNRSCGVTLQEVPPTSVNAPSAGKSEKQSSPQSAASEKVMTTQYPDVNVLVGASEKPSIPVSEVDVMPELSPIPEMATGSILDIPEENYMGPETGNDGFMDPNLLGVNGAMPIDIGSISPDTDIDDLLLNSSFWDDLVQSSLPEDIEIDAADVSKGNEVQPVENGCNKEHMDQLTEQMGLLSSDAKRV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1070 496 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 333 IPR027725 -
Lele54g1070 496 MobiDBLite consensus disorder prediction 1 28 - -
Lele54g1070 496 SMART hsfneu3 26 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g1070 496 Gene3D - 23 120 IPR036388 -
Lele54g1070 496 Coils Coil 148 196 - -
Lele54g1070 496 Pfam HSF-type DNA-binding 30 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g1070 496 FunFam Heat shock transcription factor 1 23 120 - -
Lele54g1070 496 SUPERFAMILY "Winged helix" DNA-binding domain 26 119 IPR036390 -
Lele54g1070 496 MobiDBLite consensus disorder prediction 126 140 - -
Lele54g1070 496 MobiDBLite consensus disorder prediction 119 141 - -
Lele54g1070 496 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g1070 496 MobiDBLite consensus disorder prediction 299 346 - -
Lele54g1070 496 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g1070 496 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele54g1070 496 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1070 Lele-ChrLele54 16696746 16699788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1070 7 490 HSF AT1G32330 52.362 2.29e-161 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele54g1070 HSF_DNA-bind 4.6e-33 CL0123