Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1069 ATGAGCTCGTCGACTATGGAGGATGAGGCCCCTGACCTGGCGTGCCAGCTTGAACACGCGCAAGGCTTGGTCGATGCTCTCGGCGCCGTTCGTTGGAAACGCCACCAGCTATTCGCTCGTTATGATTACAACGCACAGGGACGGCCTCGTTTTGGAGTAAGCTTGGGCCTTCTAGTGGATTGTTTAAACGCATTATCGGTAACTGGTCAATCAAGCATGATTGAAATTCAATACCCTGGTCCTGACATGCAGGTTCTTCTGAAGAAAGTTGATTCGCAGGATGCTAGCATTTATGCAGAGATCAGGACAAGGATTCCTGACACAATGCCATGGGACTACAACTTTGAACCTGCTGGAACAAATCCTCTGACCTTACTCACTGAAGAAGCTATTGAGGATCTAGAGTGGCCTGGTTCTAGCATCCAGATCATTCTACAGCCAGATCCCCCTTCCGTTTCCTTAAAAGGTGAAGGCCATGGAGACTTGCAGCAGTGTTATCAAAGAAAACAGAGCAAGCAAGCTAACCATAGGGAGAGGTGGACTTCTGAAAGTTCAGCACCTGGTTACGATTGGCAAATTGCCTTCCTTACATGCATATGTAGATTCTGTGGGTTTGCAATGTACCTTGACTTTTTCAATGAATTGCTGTTGCAATCAAGTACAGGACACCGGGAGGCTCATGATCGTGTCATGGTAGGTCGAACAACTGTAATAGTAGCGCACAGACTTTCTACAATCAGAAACGCAGATATGATTGCCGTTGTTCAAGGAGGAAGATTGTCGAAACTGGCAGATGAGCTCATTGCCCATCCGAATAGTGCATATGCATCTCTTGTTCAACTCCAACAGGCAGCTTCTTTGTATGTTTATGTATTTCTCTCTGGGGATCGTAGGGTAAGGTACTCAAGAGAATTATCTCGTACAACGACTAGCTTAGGTAGCAGTTTTCGATCAGATAAAGAATCTATTGGTCGTGTTGATGCTGATGAAGTGGATAGTATTAGAAAGACAAGGCATGTTTCCGCAAAGAGATTATACTCCATGATAGGACCTGATTGGTACTATGGGGTTATAGGGACTTTATGTGCATTTATTGCTGGAGCCCAGACGCCTCTTTTTGCTCTAGGAATAGCTCATGCTCTGGTATCATATTACATGGACTGGGAGACTACCTGTCGTGAGGTCAAGAAAATTGCTTTCCTCTTTTGTGGGGCAGCAGTTGTAACCGTCATTGTCCATTCCATTGAACACCTTTGTTTTGGAATCATGGGTGAGCGACTTACTCTTCGTGTCCGAGAAGCTTTGTTTTCTGGTAAGTGTGATCAACTGATCAATGCTTTGCCTACTTCTGTTTTGAAGAATGAAATTGGCTGGTTCGATGATGCAGACAACACAAGTTCTTTGCTTTCATCACGTCTAGAGAATGATGCAACTTTGTTGCGAACTATAGTTGTTGATCGGTCTACAATTCTCTTACAGAATGTTGGTCTGGTCGTTGCTTCTTTTATCATTGCCTTCTTGTTGAACTGGAGAATAACGCTTGTTGTCATAGCCACTTATCCTTTGGTCATCAGTGGTCTCATTAGTGAGGCTAACATGCTGGCTGGGGAGGCTGTGAGTAACATACGCACTGTTGCTGCATTTTGTTCAGAAGATAAAGTCCTTGAACTTTATGCTAGGGAGCTTGTTGATCCTTCCAAGCTTGCACCTCCAAATGTTATGCCTTCTAGCTTAGATTTGCTTCACCTCTACAGCTATCTGGTGGCCAAAGACAGAATCTTGCTTCTTGATGAAGCCACAACTGCACTGGCTGTGGAATCAGAGCTTGTGATTCAGCAAGCACTAGACAGATTGATGCAGAACAGAACAACATTAATGGTGGCACATAGGCCACCGTGTTGTGAGGTGACTGGTGTGAAGAAAGGGCCATGGACACCTGAAGAAGATGAGAAGCTCATCGCTTATATCAGTAAACATGGCAGGGGAAGTTGGAGAACACTTCCAAAGCATGCAGGCCTCAACAGATGCGGTAAGAGTTGCAGGCTTCGGTGGTCGAAGATTGCAACGCATCTTCCCGGGAGGACTGATAATGAAATTAAGAATTTCTGGAACACAAGTATAAGGAAGAAGCTTCTGCAGATGGTTATTGATCCAGAAACTCACCAGCCAAGAACTGACTTGAAGCATCTCTTGAATCTCTCGCAGTCGCTTGGCATGCCTAATAATAATAACAACTTGATGAGCCATGCGGGTCTGCAGGGTTTACTGCAACCAGATTTGACTCATCAGTTAGTCCAAATCCAACTTCTGCAGAATCTGTTGCAGCTTATGAATGGCAATTCATCGTTGATCAGTAACATGCAGAGTAATCTCCCACTCTTGGGCAATCACAGTTTGATAAATAACCCAGTAATGGAAGCAGATACAAATGGTCTGAACAGTGCTCCATTTCCTTCAGCACCAAGTGAATCACGCCAGGATGTTTCAGAATCATGGACAGACCAAGAAGGAGCATCGTCAGATCAACAAGTGCTGGGTCTTAATAATAGTATCAGCAGAACTTCATCACAAGAAATGAATATTCAAGCTGAAAATCCATTTCCTGCAACCAGTTCAGGCAACTTCAACCATCAGTCATCTCCATCCACAGTCTTTGATCCTTGGGAAAAGCTCTTGGAAGATGATGATGCAAGCGATTCCTATTGGAAAGAACTTTTAGAGTAA 2724 0.4438 MSSSTMEDEAPDLACQLEHAQGLVDALGAVRWKRHQLFARYDYNAQGRPRFGVSLGLLVDCLNALSVTGQSSMIEIQYPGPDMQVLLKKVDSQDASIYAEIRTRIPDTMPWDYNFEPAGTNPLTLLTEEAIEDLEWPGSSIQIILQPDPPSVSLKGEGHGDLQQCYQRKQSKQANHRERWTSESSAPGYDWQIAFLTCICRFCGFAMYLDFFNELLLQSSTGHREAHDRVMVGRTTVIVAHRLSTIRNADMIAVVQGGRLSKLADELIAHPNSAYASLVQLQQAASLYVYVFLSGDRRVRYSRELSRTTTSLGSSFRSDKESIGRVDADEVDSIRKTRHVSAKRLYSMIGPDWYYGVIGTLCAFIAGAQTPLFALGIAHALVSYYMDWETTCREVKKIAFLFCGAAVVTVIVHSIEHLCFGIMGERLTLRVREALFSGKCDQLINALPTSVLKNEIGWFDDADNTSSLLSSRLENDATLLRTIVVDRSTILLQNVGLVVASFIIAFLLNWRITLVVIATYPLVISGLISEANMLAGEAVSNIRTVAAFCSEDKVLELYARELVDPSKLAPPNVMPSSLDLLHLYSYLVAKDRILLLDEATTALAVESELVIQQALDRLMQNRTTLMVAHRPPCCEVTGVKKGPWTPEEDEKLIAYISKHGRGSWRTLPKHAGLNRCGKSCRLRWSKIATHLPGRTDNEIKNFWNTSIRKKLLQMVIDPETHQPRTDLKHLLNLSQSLGMPNNNNNLMSHAGLQGLLQPDLTHQLVQIQLLQNLLQLMNGNSSLISNMQSNLPLLGNHSLINNPVMEADTNGLNSAPFPSAPSESRQDVSESWTDQEGASSDQQVLGLNNSISRTSSQEMNIQAENPFPATSSGNFNHQSSPSTVFDPWEKLLEDDDASDSYWKELLE 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1069 907 Pfam ABC transporter transmembrane region 358 524 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele54g1069 907 Gene3D - 209 289 IPR027417 -
Lele54g1069 907 Pfam Myb-like DNA-binding domain 641 685 IPR001005 -
Lele54g1069 907 Gene3D - 12 183 - -
Lele54g1069 907 SUPERFAMILY Homeodomain-like 641 708 IPR009057 -
Lele54g1069 907 CDD ABC_6TM_Pgp_ABCB1_D2_like 346 569 - -
Lele54g1069 907 Gene3D ABC transporter type 1, transmembrane domain 305 569 IPR036640 GO:0005524|GO:0016020
Lele54g1069 907 SUPERFAMILY ABC transporter transmembrane region 343 566 IPR036640 GO:0005524|GO:0016020
Lele54g1069 907 CDD SANT 643 705 IPR001005 -
Lele54g1069 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 282 IPR027417 -
Lele54g1069 907 MobiDBLite consensus disorder prediction 805 887 - -
Lele54g1069 907 Gene3D - 587 630 IPR027417 -
Lele54g1069 907 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 639 692 IPR017930 -
Lele54g1069 907 FunFam MYB-related transcription factor 640 688 - -
Lele54g1069 907 SMART sant 640 709 IPR001005 -
Lele54g1069 907 PANTHER ABC TRANSPORTER B FAMILY 330 566 - -
Lele54g1069 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 633 IPR027417 -
Lele54g1069 907 MobiDBLite consensus disorder prediction 805 885 - -
Lele54g1069 907 Gene3D - 685 712 - -
Lele54g1069 907 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 357 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele54g1069 907 ProSiteProfiles Myb-like domain profile. 636 688 IPR001005 -
Lele54g1069 907 Gene3D - 639 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1069 Lele-ChrLele54 16687707 16695512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1069 630 907 MYB Transcription Factor Family AT3G02940 40.062 4.79e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g1069 ABC_membrane 2.4e-18 CL0241