Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1068 ATGGGTAGGCCGCCGTGTTGTTGTGATGAGAGTGGTACTATGAAGAGAGGACCATGGACACCTGAAGAAGATGACAAGCTTTCGGATTATATCAGCAAACATGGCACTGGAAATTGGAGAACAGTTCCAAAGCATTCAGGTCTCAACAGATGCGGCAAAAGCTGCAGGCTAAGGTGGACCAACTATCTTAGGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGCGATTGATCATTAACCTTCGTTCTGTTCTTGGAAATAAGTGGTCGAAGATTGCAACTCATCTTCCAGGGAGGACTGATAATGAGATTAAGAATTTCTGGAACACCATTTTAAGGAAGAAGCTTCTGCAGATGGGTATTGAACCAGAAACTCGCCAGCCAAGAACTGACTTGAAGCATCTCTTGAATCTCTCGCAGTTGCTTGGCAGTATGCCTAATAATAATAACAACTTGATGAGGCATGCGGGTTTGCAGGGTTTACTGCAACCAGATTTGACTCATCAGTTAGCCCAAATCCAACTTCTGCAGAATCTGTTGCAGCTTATGAATGACAATTCATCGTTTGTCAATAACATGCAGAGTAATTTCCCTCTCTTGGGCAATCACAGTTTCATCAATAACCCAATAATGGAAGAAGATACAAATGGTCTAAACAGTGCTCTCACCAACAACTTGAGAGAGCAAGAATTATATGCAAGCCCTACTCTATTTCTTGATCCAGCTCTAAGCGACACACACCAGGATATTTCAGAATCATGGGCAAACCTAGAAGGAGCGTTAGATCAACAAGCTTTTGATATCAATTCATCGCATGAATTGAATCAAGCTGAAAATCCATTTCTTGCAACTGGTTCAGCCAACTTCAACCAAATGGAGAGATTCAATATTGATGAAATAATAATGTCTCAATCCTCAGCCTTTGATGCTTGGGAAAAACTACTCTTGGAAGATGATACGAGCGATGATTCCTACTGGAAAGAACTTTTAGAATCGCCGATTTCATGGTAG 1017 0.4159 MGRPPCCCDESGTMKRGPWTPEEDDKLSDYISKHGTGNWRTVPKHSGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERLIINLRSVLGNKWSKIATHLPGRTDNEIKNFWNTILRKKLLQMGIEPETRQPRTDLKHLLNLSQLLGSMPNNNNNLMRHAGLQGLLQPDLTHQLAQIQLLQNLLQLMNDNSSFVNNMQSNFPLLGNHSFINNPIMEEDTNGLNSALTNNLREQELYASPTLFLDPALSDTHQDISESWANLEGALDQQAFDINSSHELNQAENPFLATGSANFNQMERFNIDEIIMSQSSAFDAWEKLLLEDDTSDDSYWKELLESPISW 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1068 338 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lele54g1068 338 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lele54g1068 338 CDD SANT 18 63 IPR001005 -
Lele54g1068 338 FunFam Transcription factor MYB39 71 132 - -
Lele54g1068 338 CDD SANT 71 114 IPR001005 -
Lele54g1068 338 FunFam MYB-related transcription factor 15 68 - -
Lele54g1068 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Lele54g1068 338 PANTHER F14D16.11-RELATED 1 333 - -
Lele54g1068 338 SMART sant 68 116 IPR001005 -
Lele54g1068 338 SMART sant 15 65 IPR001005 -
Lele54g1068 338 Gene3D - 15 68 - -
Lele54g1068 338 Gene3D - 71 118 - -
Lele54g1068 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Lele54g1068 338 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lele54g1068 338 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lele54g1068 338 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1068 Lele-ChrLele54 16683219 16684359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1068 1 333 MYB Transcription Factor Family AT5G16770 44.538 2.09e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g1068 Myb_DNA-binding 3.2e-17 CL0123