Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1067 ATGGGTAGGCCACCATGCTCTGAGGAGACTGGTATGAAGAAAGGGCCATGGACGCCTGAAGAAGATGAGAAGCTTGTTAAGTATATCAGCAAACATGGCAATGGAAATTGGAAAGCAGTTCCAAAGCATGCCGGCCTCAATAGATACGGCAAAAGTTGCAGGCTAAGGTGGACCAACTATCTTAGGCCTGATATCAAGAGAGGCAAATTCACCGAAGAAGAGGAGCAATTGATCATCAACCTTCATTCTGTTCTTGGAAACAAGTGGTCGAAGATTGCAACGCATCTTCCAGGGAGGACTGACAACGAGATTAAGAATATCTGGAACACAAATTTAAGGAAGAAGCTTCTGCAGATGGGTATTGATCCAGAAACTCACCAGCCAAGAACTGACTTGAAGCATCTCTTGAATCTCTCGCAGTTGCTTGGCAGCATGCCTAATAATAATTTGATGAGCCATGCGGGTCTGCAGGGTTTACTGCGACCAGATTTGACTCATCAGTTAGCCCAAATCGAACTTCTGCAGAATCTGTTGCAGCTTATGAATGGCAATTCATCGGTGGTCAGTAACATGCAGAGTAATCTCCCACTCTTGGGCAATCACAGTTTGATGAATAACCCAATAATAATGGAAGCAGATACAAATGGTCTGAATAGTGCTCTCCTCAACAACTTGAGAGAGCAAGAATTATATGCAAGCCCTGCTCTATTTCCTTCGGCACCAAGTGAATCGCGGCAGGATGTTTCAGAATCATGGACAGACCAAGAAGGAGCATCATCAGATCAAGAAGTTTCTGGTATTAATAATAGTATCAGCGGAACATCATCACATGACATAAGTCAAGCAGAAAACCTAGTTCCTACGTTTGATTCAACCACGTCCTTCAATCAAATGGAGATTGGCCCTCTTACAGATGAAGTGCCAACCCAGTCAACCTCATCCACAATCTATGATACTATTTTGGAGAAGCTCTTGGAAGATGACGATGATACAATCGATTCCTTCTGGAAAGAACTCTTAAACTCGACGTCCACTCCTGCTTCGCCTATTTCGTGGTAG 1059 0.4381 MGRPPCSEETGMKKGPWTPEEDEKLVKYISKHGNGNWKAVPKHAGLNRYGKSCRLRWTNYLRPDIKRGKFTEEEEQLIINLHSVLGNKWSKIATHLPGRTDNEIKNIWNTNLRKKLLQMGIDPETHQPRTDLKHLLNLSQLLGSMPNNNLMSHAGLQGLLRPDLTHQLAQIELLQNLLQLMNGNSSVVSNMQSNLPLLGNHSLMNNPIIMEADTNGLNSALLNNLREQELYASPALFPSAPSESRQDVSESWTDQEGASSDQEVSGINNSISGTSSHDISQAENLVPTFDSTTSFNQMEIGPLTDEVPTQSTSSTIYDTILEKLLEDDDDTIDSFWKELLNSTSTPASPISW 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1067 352 FunFam MYB-related transcription factor 13 66 - -
Lele54g1067 352 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele54g1067 352 MobiDBLite consensus disorder prediction 239 279 - -
Lele54g1067 352 Gene3D - 68 135 - -
Lele54g1067 352 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele54g1067 352 FunFam Transcription factor MYB39 69 130 - -
Lele54g1067 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele54g1067 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 61 IPR017930 -
Lele54g1067 352 PANTHER F14D16.11-RELATED 1 341 - -
Lele54g1067 352 SMART sant 66 114 IPR001005 -
Lele54g1067 352 SMART sant 13 63 IPR001005 -
Lele54g1067 352 MobiDBLite consensus disorder prediction 237 279 - -
Lele54g1067 352 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele54g1067 352 Gene3D - 13 66 - -
Lele54g1067 352 CDD SANT 16 61 IPR001005 -
Lele54g1067 352 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lele54g1067 352 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele54g1067 352 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1067 Lele-ChrLele54 16678753 16680124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1067 1 340 MYB Transcription Factor Family AT5G16770 42.818 9.60e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g1067 Myb_DNA-binding 5.6e-18 CL0123