Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1064 ATGGCTTCTCTTGGGAACCCCAGAAGTTGGGTTCCATACATGAACAACAAAGATTGTTCTCAAGGCTTCTGTAGTCTCTACTGTCCACAGTGGTGTTACATAGTGTATCCTCCTCCTCCCCCCTTTGAATTACCTGAAGAAAATTCAAACCCTAATTTTTCACCTCTGGTTATAGCAGTCATCGGAGTCTTGGCCAGTGCTATTCTTCTTGTTAGCTACTACACCATAATCTCCAGGTACTGTGGCAACCCAGAATCTTCAGACACACAGAATCATCACGACCCTTCAAATGATGAATTGGAACAGTATTTTCACGGTCCTTCACTTCACGAGCCATGGCGCTCGTCACCCAATGGTCTCGACGAGGCTCTGATAAAGTCCATCACAGTTTGTAAGTTCAAGAAAGAAGATGGGTTGGTGACAGTAGCAGATTGCTCTGTTTGTCTCAGTGAGTTCAAAGACGATGAAAGTATCAGGCTTTTGCCTAAGTGCAGCCATGCTTTTCACATCCCTTGTATTGATACGTGGCTCAAATCTCACTCCTCTTGCCCTCTCTGTCGAGCTAGTATCATCACCTTCAACGCTTCAGCCCTTGTGGCTTCTGATAATTCCACGGTACAGAATTCAACTTTCCAGGAAAATCAACCTGGGAATGAAAACAATCAAGTGGTGGGTTTAGCAGTGGAAGAACAAGAAAAAAGTGAAGAAACCATACAACGTTTTACAGCTCCGAAGCCTGCTACATTGCGTGCTATGAGCGATTTGGGGAATTTGAAGGGAAGACACAGTGTGATTGAGATTAAAGATGAAGGGTACGTTGACTTTGAGCCCTTTAGAAGGTCAATTTCTATGGACCATTCATTTCAAAGTCGGAACAGAGTAGAAGAAGAAGAAGAAAAAGGCTCTGTTAATGGAGCAGGGTCTTCATTCCTTCTACTTCCACCATCACCCTCTCTCATCCCACTTAAGCTTTACATAATGGCTATGAGAGCTTCTCTCTTCAGAACCGGCTCTAGTCCGGTTCAGAAGCCCGTCCTTCCCGGTTTTCCCAACTCTTCTTTGTCGAGTCATGCTTCGCTCCCCCGCGATCACATTCCCCGTCGTTCTTCCTCGATTTCGCTGAATTCCCACTCACCTGACCAGAGAGATTCCCCTCCGAGGACGATCAGCAGAGCGACGTCTGAAAGTGACGCGATTCGATCGGCCACTGAGAGTTTTGGTGTTTCCCGGAAGATGAAGCAAACCGTAGCACGTTCTTTTCCAGCCACTGTGTCGGGCGAAGAATTCGTCTCCGAAAGCGAATGGTACGCCATCGGAGGTAAGTTCCACTATGCCGGAGTTCGACCTGACATTGGAACCTCGCTGGAGGAGTTCGGATTCGGTGGTGGAGTAGGAAGCGGGCGCGACGATGGGATCGCAATGGTCACCGGTGGAAACGATGGGGATAGGGTGAAAATCGGTGCGTACTATGAGGAAATGCTCAAGTCAAACCCAACAGACGCACTTCTGCTGGGGAACTACGGGAAATTTCTTTATGAGGTGGAGAAAGACGCTGTGAGAGCAGAGGAATATTACGAAAGAGCAATACTTGCGAATCCTGGAGATGGTGAATTGCTTTCTTTGTATGGGAAGCTCATATGGGAAACACAGAGAGACGAAGGCAGAGCCAAATCTTACTTCGAGCACGCCGTTCATGCCTCCCCTTACGACTGCTCGATTTTGGGATCCTATGCGCACTTCATGTGGGAAGCAGAGGAAGAAGAAGATGGCGCAAACAGAATTGCGATGGAGGTGACAGCTGCGCGTTAA 1809 0.4771 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYIVYPPPPPFELPEENSNPNFSPLVIAVIGVLASAILLVSYYTIISRYCGNPESSDTQNHHDPSNDELEQYFHGPSLHEPWRSSPNGLDEALIKSITVCKFKKEDGLVTVADCSVCLSEFKDDESIRLLPKCSHAFHIPCIDTWLKSHSSCPLCRASIITFNASALVASDNSTVQNSTFQENQPGNENNQVVGLAVEEQEKSEETIQRFTAPKPATLRAMSDLGNLKGRHSVIEIKDEGYVDFEPFRRSISMDHSFQSRNRVEEEEEKGSVNGAGSSFLLLPPSPSLIPLKLYIMAMRASLFRTGSSPVQKPVLPGFPNSSLSSHASLPRDHIPRRSSSISLNSHSPDQRDSPPRTISRATSESDAIRSATESFGVSRKMKQTVARSFPATVSGEEFVSESEWYAIGGKFHYAGVRPDIGTSLEEFGFGGGVGSGRDDGIAMVTGGNDGDRVKIGAYYEEMLKSNPTDALLLGNYGKFLYEVEKDAVRAEEYYERAILANPGDGELLSLYGKLIWETQRDEGRAKSYFEHAVHASPYDCSILGSYAHFMWEAEEEEDGANRIAMEVTAAR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1064 602 PANTHER RING-H2 FINGER PROTEIN ATL16 41 290 IPR044600 GO:0016567|GO:0016740
Lele54g1064 602 Pfam Ring finger domain 144 187 IPR001841 -
Lele54g1064 602 FunFam RING-H2 finger protein ATL54 120 193 - -
Lele54g1064 602 SMART ring_2 145 186 IPR001841 -
Lele54g1064 602 SUPERFAMILY RING/U-box 132 192 - -
Lele54g1064 602 SUPERFAMILY TPR-like 488 589 IPR011990 GO:0005515
Lele54g1064 602 MobiDBLite consensus disorder prediction 287 308 - -
Lele54g1064 602 Gene3D Tetratricopeptide repeat domain 479 590 IPR011990 GO:0005515
Lele54g1064 602 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Lele54g1064 602 MobiDBLite consensus disorder prediction 352 405 - -
Lele54g1064 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 194 IPR013083 -
Lele54g1064 602 MobiDBLite consensus disorder prediction 366 405 - -
Lele54g1064 602 CDD RING-H2_PA-TM-RING 144 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1064 Lele-ChrLele54 16658676 16663989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1064 1 254 C3H Transcription Factor Family AT3G03550 45.926 3.05e-69 226