Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1058 ATGGCGTCCGAAAGCCTTACCGACAAGAACGTTGTCTTCAGAAAACTGAAGGCGAAGTCCGATAATAAGATGTGTTTCGATTGTAATGCAAAGAATCCAACTTGGGCGTCCATCACTTATGGGATTTTTCTCTGCATCGATTGTTCGGCTGTTCATCGCAGTCTTGGCGTCCACATAAGTTTTGTGAGATCAACGAATTTGGATTCATGGACCCCTGAGCAGCTAAGAATGATGAGCTTTGGAGGAAATAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACAGACGGTGGTAAAATAGGGGCCAAGTATACATCTAGAGCTGCAGATTTGTATAGACAGATTCTTTCAAAGGAAGTTGCTAAAAGTATGGCTGAGGAGGCTGGTACGCCAACATCACCTCTTGGTTCTCAGTCTGCACAAATTTCTAATGGACCTCCTGAGGTTAAAACCGAGGAAGAACCAAAAGAGAACACCGTAGGGAAGCAAGAAATGCCTGAAAGCTCTGCGTCACCAAGAGCTTCACATACAATTGTTTCTTCTTCTGTAAAGAAGCCTATTGGTACAAAAAAGCCTGGGAAGAGCGGGGGTCTTGGTGCCCGGAAGCTTACCAAAAAGCCAAGTGAATCTCTCTATGAGCAGAAGCCGGAAGAACCGCCTGCTCCAGTTTCTTCCTCAACAAATAGCAGTTTGCTTGCTGGGCCACCCTTGACATCTAGGTTTGAGTATGCTGATGATGTCCAGTCTTCTGAGTCAAACTCTGGAGGGTCACATCTAATTGGTCATGTGGCTCCACCAAAGTCATCAAGCTTCTTTGCAGATTTCGGAATGGATAGTGGTTTTCCAAAGAAATATGGATCAAATTCCTCAAAAGTGCAAGTTGAAGAATCTGATGAAGCGAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCAGCCCAATTTTTTGGGGATCAGAACAGAGCCGCAGATGTGGACGCTCAAGTTACTTTGTCTAAGTTTTCAGGTTCAACTTCCATTTCCAGTGCTGATCTTTTTGGCCATTCGGATGACAAATCCGCCATTGATCTCACTGCTAATGACCTCTTAAATCGACTGTCCTTCCAGGCTCAGCAGGATATATCTAACATTAAAAATGTTGCCGGAGAGACTGGAAAGAAGCTCAGCTCCCTGGCCTCCAATTTGTTAACGGACCTTCAGGACAGAATTCTTTAA 1218 0.4417 MASESLTDKNVVFRKLKAKSDNKMCFDCNAKNPTWASITYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRMMSFGGNNRAQVFFKQHGWTDGGKIGAKYTSRAADLYRQILSKEVAKSMAEEAGTPTSPLGSQSAQISNGPPEVKTEEEPKENTVGKQEMPESSASPRASHTIVSSSVKKPIGTKKPGKSGGLGARKLTKKPSESLYEQKPEEPPAPVSSSTNSSLLAGPPLTSRFEYADDVQSSESNSGGSHLIGHVAPPKSSSFFADFGMDSGFPKKYGSNSSKVQVEESDEARRKFSNAKSISSAQFFGDQNRAADVDAQVTLSKFSGSTSISSADLFGHSDDKSAIDLTANDLLNRLSFQAQQDISNIKNVAGETGKKLSSLASNLLTDLQDRIL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1058 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Lele54g1058 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Lele54g1058 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Lele54g1058 405 MobiDBLite consensus disorder prediction 131 147 - -
Lele54g1058 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Lele54g1058 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Lele54g1058 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Lele54g1058 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Lele54g1058 405 MobiDBLite consensus disorder prediction 244 258 - -
Lele54g1058 405 MobiDBLite consensus disorder prediction 221 236 - -
Lele54g1058 405 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Lele54g1058 405 MobiDBLite consensus disorder prediction 124 264 - -
Lele54g1058 405 Pfam Putative GTPase activating protein for Arf 12 97 IPR001164 GO:0005096
Lele54g1058 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 4 405 - -
Lele54g1058 405 MobiDBLite consensus disorder prediction 163 185 - -
Lele54g1058 405 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1058 Lele-ChrLele54 16614432 16616874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1058 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 1.24e-19 87.4