Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1055 ATGCATCTTTGGACCGACGATAACTCCTCCGTCATGGACTCTTTCATAGGCTCCGATCTATCTTCTCTCTGGCCTCCTCAGCAATCCTCTGCTTCTACGACTACTACCACTGGAACTGACCCCACCAAAGCTTTCTCTCAAAACCAGCCTTCCGTTTGCATCTTCAATCAGGAGACTCTCCAGCAACGTCTCCAGGCGCTGATTGAAAAAGCCAGCGAGAGCTGGACCTACGCTATTTTCTGGCAATCTTCTTGTGATTACTCGGGATCCTCCGTGTTGGGTTGGGGTGATGGCTACTACAAAGGCGAGGAGGATAAAGGAAAGGGGAAGGCCAAAATGACGGCGTCTTCCGCAGCCGAGCAGGAGCACCGGAAGAAGGTTCTTCGCGAGCTGAATTCACTAATATCCGGGTCGTCGTCCTCCCCGGATGACGCCGTAGACGAAGAAGTAACAGATACCGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTTACAACGGCGGCGGATTGCCGGGGCAGGCGTTCCTCAATTCGAGCCCTGTTTGGGTCGCCGGATCCGAGGGGTTGGCAGCTTCAACATGCGAGAGGGCGAGGCAGGGTCAGGTGTTCGGGCTTCAGACTTTGGTTTGTATACCGTCGGCGAGTGGGGTGGTCGAACTAGGCTCAACGGAGCTGATATTTCAGAACTCTGATCTGATGAATAAGGTCAGGGATTTGTTCAATTTCAATAGCACCGAAGCGAGTTCTGTGTGGCCGTCAAATGCTTCAACTGCGGCTGATCAGGGTGAGAACGACCCTTCTTCACTCTGGCTCAACGATCCTTCTGCAGTTGAAATTAGGGATTCGGTGACTACTGTTGCGCCCAATTCAGTGCCCAGTTCTACCAACAGTCATAACAATAATCCGAAGCCGATGCAGTTAGATACAAGAGGTTCCACGACTTTAGCTGAGACCCCAAGTTCCATTCATATCCCAAACGCTCACCATAGCCACCAACAACAACGGCAACAGCAGCGTCATTCGCTGAACCAGGGTTTCTTTTCACAGGAATTGAACTTTTCGGACTATGGATTGGACGCAAACGGCGTGAAAAACGGTAATTCGCATTCCCTGAAGCTGGAATCGGGTGACATTTTGAATTTCGGGGGGAGCAAGAGAAACGCTTATAATGGAAATGGGAATTTCCTTTCAGGTCAGTCTCAGTTCAATGCTGAGGAGAAGAAGAGGAGGTCGCCTACGTCTAGGGGCAGCAATGACGAAGGCATGCTTTCTTTCACTTCAGGTGTTGTTTTGCCCGCTTCAAATATGAAGACCGCCGGCGGCGGCGGTGGCGATTCCGATCATTCCGATCTCGAAGCTTCTGTGATTAAGGAGGTAGACAGTAAAGTGGCCGAACCAGAGAAAAAACCTCGGAAGAGAGGGCGAAAGCCCGCAAATGGCAGAGAGGAGCCTCTGAATCATGTTGAAGCTGAAAGGCAGAGGAGAGAGAAGCTCAATCAACGGTTCTATGCGCTTCGTGCTGTGGTTCCAAACGTTTCAAAGATGGATAAAGCATCCCTTCTGGGTGATGCCATCTCTTACATCTCTGAGCTCAAGTCGAAGCTTGAGAGAATGGAATCAGACAAGAACGAATTGCAGGACCAATTGGATTCTGTGAAGAAGGAACTCGATCTAGCCCACAAAGTTTCAACGCCACCTCCACCGGAGAAAGAACCAAATCCGTCCAATCGTCACGCTAACAAGACAACTGATTTGGATATCGACGTGAAGATTATAGGTTGGGATGCAATGATCCGGATTCAATGCAGCAGGAAGAACCACCCAGCAGCAAGGTTGATGGCTGCATTGAAGGAACTAGACCTGGATGTGAACCACGCGAGCGTGTCGGTGATGAACGATTTGATGATCCAACAAGCAACAGTAAGGATGGGGAGTCAATTCTACACGCAGGAGCAACTCCGTTTAGCACTTTCGTCCAAAGTTGGCGATGCCCGATAG 2001 0.5022 MHLWTDDNSSVMDSFIGSDLSSLWPPQQSSASTTTTTGTDPTKAFSQNQPSVCIFNQETLQQRLQALIEKASESWTYAIFWQSSCDYSGSSVLGWGDGYYKGEEDKGKGKAKMTASSAAEQEHRKKVLRELNSLISGSSSSPDDAVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLNSSPVWVAGSEGLAASTCERARQGQVFGLQTLVCIPSASGVVELGSTELIFQNSDLMNKVRDLFNFNSTEASSVWPSNASTAADQGENDPSSLWLNDPSAVEIRDSVTTVAPNSVPSSTNSHNNNPKPMQLDTRGSTTLAETPSSIHIPNAHHSHQQQRQQQRHSLNQGFFSQELNFSDYGLDANGVKNGNSHSLKLESGDILNFGGSKRNAYNGNGNFLSGQSQFNAEEKKRRSPTSRGSNDEGMLSFTSGVVLPASNMKTAGGGGGDSDHSDLEASVIKEVDSKVAEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYISELKSKLERMESDKNELQDQLDSVKKELDLAHKVSTPPPPEKEPNPSNRHANKTTDLDIDVKIIGWDAMIRIQCSRKNHPAARLMAALKELDLDVNHASVSVMNDLMIQQATVRMGSQFYTQEQLRLALSSKVGDAR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1055 666 MobiDBLite consensus disorder prediction 286 342 - -
Lele54g1055 666 MobiDBLite consensus disorder prediction 391 425 - -
Lele54g1055 666 FunFam Transcription factor bHLH13 476 550 - -
Lele54g1055 666 MobiDBLite consensus disorder prediction 250 272 - -
Lele54g1055 666 PANTHER MYC 47 661 IPR045084 GO:0003700|GO:0006355
Lele54g1055 666 Pfam Helix-loop-helix DNA-binding domain 487 532 IPR011598 GO:0046983
Lele54g1055 666 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 483 532 IPR011598 GO:0046983
Lele54g1055 666 Gene3D - 475 563 IPR036638 GO:0046983
Lele54g1055 666 MobiDBLite consensus disorder prediction 250 273 - -
Lele54g1055 666 MobiDBLite consensus disorder prediction 561 582 - -
Lele54g1055 666 SMART finulus 489 538 IPR011598 GO:0046983
Lele54g1055 666 MobiDBLite consensus disorder prediction 458 493 - -
Lele54g1055 666 CDD bHLH_AtAIB_like 480 556 - -
Lele54g1055 666 MobiDBLite consensus disorder prediction 23 47 - -
Lele54g1055 666 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 241 IPR025610 -
Lele54g1055 666 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 486 551 IPR036638 GO:0046983
Lele54g1055 666 Coils Coil 529 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1055 Lele-ChrLele54 16586634 16588634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1055 1 663 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.410 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele54g1055 bHLH-MYC_N 3.4e-55 CL0161