Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1047 ATGCACTTAGCCTCAAGCATCTGTTGCTTTGTGCTTAATGGAAGGCCCCTGACCTTTCTCTCTCTTTCTGCTGTTCCCTTCAATACCTTTGCTTTGCATTTTCCTGCGAAAAAGTTTCTGAAGAATAATCGGAGGTTTTCTTCTTTGCTGATCTACCAAGACTACGTTTGTTGGAGCCTGATGTCTCCACCAGTTCTGAGTGCTCAGGAGGAAGGGCAGAGCAACACCTCAACAATAACTTCTTCACGATCATTAGATCTTATTTCCCAAAATGTGACTGGATTAAAAGAACGCAATTACCTAGGGTTATCAGATTGTTCATCAGTGGACAGCTCTACTGTTTCAAGCGACTCAGATGAGAAAAAGGACAATCTGAATTTGAAGGCTACAGAATTGAGGTTGGGTCTTCCAGGATCCCAATCACCTGAAAGGGATGATATCTCAACAAAACTTGATGAGAAGCCGCTGTTTCCTTTTCTTCCTACAAAATATGGGATCTGCTCATTGTCCCAGAAAACTGTGATTACAGGCAACAAAAGGGGATTCTTTGACACTATGGATGGGTTCACTGAGGGGAAGTTTCCTGGGAATTCGGGGGCAAATATGCTGCTGTCTCCTAGATCTGCTAGAGCTCAGCCCACCACGACAAAAGAAATGGCGAATAAGGTGTTGCAAGAATGGCCAAGTGCAACTAATGGAGCAGGCCACAGCAAAACGGATGCTTCTATCGGTGGCAGTGCTCCTGCCTCTAAGGCACAGGTTGTTGGTTGGCCCCCAATAAGATCATTTAGGAAGAACTCATTGGCTGTCACTTCAAAGAACAATGATGAAGTAGATGGAAAACTGAGTCCCGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGAGCTCCTTATCTAAGGAAGGTTGATCTTAGGAGTTACAACACAGACCAGGATCTGTCTTCTGCCCTTGAGAAGATGTTCTGCTGTTTTACCCTAGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTAAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGCGATTGGATGCTTGTTGGTGATGTACCATGGGAAATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAAGGTTCTGATGCTATCGGCTTAGCTCCCAGGGCTATGGAGAAATCCAAGAGCAGGAGCTAG 1221 0.4488 MHLASSICCFVLNGRPLTFLSLSAVPFNTFALHFPAKKFLKNNRRFSSLLIYQDYVCWSLMSPPVLSAQEEGQSNTSTITSSRSLDLISQNVTGLKERNYLGLSDCSSVDSSTVSSDSDEKKDNLNLKATELRLGLPGSQSPERDDISTKLDEKPLFPFLPTKYGICSLSQKTVITGNKRGFFDTMDGFTEGKFPGNSGANMLLSPRSARAQPTTTKEMANKVLQEWPSATNGAGHSKTDASIGGSAPASKAQVVGWPPIRSFRKNSLAVTSKNNDEVDGKLSPAALFVKVSMDGAPYLRKVDLRSYNTDQDLSSALEKMFCCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1047 406 MobiDBLite consensus disorder prediction 229 250 - -
Lele54g1047 406 Gene3D - 282 399 - -
Lele54g1047 406 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 125 393 IPR003311 GO:0005634|GO:0006355
Lele54g1047 406 ProSiteProfiles PB1 domain profile. 286 390 IPR000270 GO:0005515
Lele54g1047 406 SUPERFAMILY CAD & PB1 domains 284 387 - -
Lele54g1047 406 MobiDBLite consensus disorder prediction 229 246 - -
Lele54g1047 406 FunFam Auxin-responsive protein 281 398 - -
Lele54g1047 406 Pfam AUX/IAA family 130 397 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1047 Lele-ChrLele54 16537406 16541767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1047 290 396 B3 DNA Binding Superfamily AT4G23980 28.037 4.97e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele54g1047 AUX_IAA 7.2e-86 CL0072