Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1045 ATGATGATGATGAAGAAGAACGTGAAGTTGCAGGTAGGGCTGTACAAGGAGATAGAAGAAGTAAGAAGTTTTGCGTCTTTTGATGAAACTTTTGTTCTGGCGATTATTCTTTTAGAGAGAGAGAGAGGGAGGGAGGGAGAGTCCTCGTTTTCTTGTGATGAAAAGACCTTGGCAGAGTCATGTATGGCGGAACCACCAATATCTGTGATATCATGTGTGGGTCAGATTCTTCAACAGCAACGTACAACTCCTGTGACGTTTATGGTAGACCATCACCAACAACACTCTCTTGGCTCCCACATTACACAAACGGATGCTTTGGCAATAATGCCACATGTCATGATTGATGTTGATCTGAGGTATTATTACCTGGCACCCTGCGATGCTGACTTCGGGTCTCACTTGGAAGGCCGTGACCTCTCTTCCCCTGATTTTTTGGATCACCTGCTTGGGGAAGAAGAATCACTGAGAAACCGGAGAGAAATGGAGCTCACACAGCTTGGTTTTCTGGAAGAGTTACTCGCTCCAAGAAGAGCAGACTCATGGACTACTATGCCCTCTGGCTTCAATGAACTCTTCCCTTCTACCTCTTGGAGTTTTGACTCTTTTGATGACAACCCTTCTTCTTTATCTTCCATCAATCCTCCATTTTCTGCACTTCCACCACCGCTCATAGACCAAAGACTTGAATATAATTCCTATCCATTTCTTGATGGCTTCACCGGGAACACTCTTGACTCTGCACCACCACTTCAAGCTTATGAAGACGAAGAGCTTGCCTTTCTGGGTTTTGAGAATCAGAGTTCTGAAGAAGTAAATACCAACAATAATGCCAGTAATTGTTTCAAAATCGAAGAACAAGCCTTGGAAGCTCCAGTGTTCAACATGGGTGTGTGTTGTTCCGAGAAGAAACCCAAATCGAAGAAGCCAGAAGGGCAGCCCTCCAAGAATCTCATGGCGGAAAGAAGAAGAAGAAAGCGCCTCAATGATCGCTTGTCCATGCTAAGATCAATCGTCCCCAAGATCAGCAAGATGGACAGGACATCAATTCTTGGAGACACCATAGATTACATGAAGGAGCTTCTGGAAAAGATAAGCAAGTTGCAGGAAGAAATGGAGAAGGAGGGTGAAAATAATCAGTTGAACTTCATAGGCATTTCCAAGGAGCTGAAGCCAAGTGAAGTAATGGCGAGAAATTCCCCTAAGTTTGAGGTTGAGAGGAGAGACCAGGACACAAGGATCAATATCTGCTGTGTCACAAAGCCTGGATTACTACTCTCAACAGTGAATACCTTGGAAGCATTAGGTCTTGAGATTCAACAATGTGTGATAAGTGGTTTCAATGATTTCACAATGCAAGCATCTTGCTCAGAGGTGGCTGAGCAGAGAGCATGTATTGGCTCTGAAGAGATTAAGGAAGCAGTGTTCAGAAATGCAGGTTATGGTGGGAGATGTCTGTAG 1461 0.4428 MMMMKKNVKLQVGLYKEIEEVRSFASFDETFVLAIILLERERGREGESSFSCDEKTLAESCMAEPPISVISCVGQILQQQRTTPVTFMVDHHQQHSLGSHITQTDALAIMPHVMIDVDLRYYYLAPCDADFGSHLEGRDLSSPDFLDHLLGEEESLRNRREMELTQLGFLEELLAPRRADSWTTMPSGFNELFPSTSWSFDSFDDNPSSLSSINPPFSALPPPLIDQRLEYNSYPFLDGFTGNTLDSAPPLQAYEDEELAFLGFENQSSEEVNTNNNASNCFKIEEQALEAPVFNMGVCCSEKKPKSKKPEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKISKLQEEMEKEGENNQLNFIGISKELKPSEVMARNSPKFEVERRDQDTRINICCVTKPGLLLSTVNTLEALGLEIQQCVISGFNDFTMQASCSEVAEQRACIGSEEIKEAVFRNAGYGGRCL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1045 486 SMART finulus 318 367 IPR011598 GO:0046983
Lele54g1045 486 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 212 477 - -
Lele54g1045 486 Coils Coil 355 378 - -
Lele54g1045 486 Pfam Helix-loop-helix DNA-binding domain 318 361 IPR011598 GO:0046983
Lele54g1045 486 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 377 IPR036638 GO:0046983
Lele54g1045 486 MobiDBLite consensus disorder prediction 302 325 - -
Lele54g1045 486 Gene3D - 303 379 IPR036638 GO:0046983
Lele54g1045 486 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1045 Lele-ChrLele54 16519052 16525712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1045 301 486 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.204 4.06e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele54g1045 HLH 1.2e-09 No_clan