Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1039 ATGGGAAGAGGGAAGATTGCGATCCAAAGGATTGAAGATACAGCAAGCAGGCAAGTGACTTTCTCGAAAAGGAGAAAGGGATTGATGAAGAAAGCGAGAGAGCTTTCAATCCTTTGTGACGTAGAAGTTGGACTCGTCATATTCTCCAGCACTGGAAGGCTTCATGAATATGCCACCACCAGCATAAAATCAGTGGTTGAGAGATATAACAGCTGCAAGGAGGAACATGAAAGACTGATGAATCCAGAATCAGACGTCAATTTCTGGCAAAGGGAGGCAGAAATATTAAGGCAGCAAGTACATAATCTGCAAGAAAACCATAGGAAATTAATGGGAGAACAGCTTTATGGTTTGAGTGTTAAAAACCTACAAGATATAGAGAATCAACTGGAGATAAGTCTGCGAGGTGTCCGCATGAAAAAGGGAAACTCTATCCATCAGCAAAATGTACAACTCTATAAGAAGGTAAACCTCATTCAACAGCAAAACATGCAACTATGCAATGAGTTATATGGCACAACAGATGCGGCTGTAGCAAGCAGAAATGCATTCATTTCATATCAAGAAGATCATCCACAAGCAATGACCCAACTTCAGTTATCGCAGCCTGAACTTGATGCTCACGAGACATCAGGCAGTGCTACAAGATGA 651 0.4163 MGRGKIAIQRIEDTASRQVTFSKRRKGLMKKARELSILCDVEVGLVIFSSTGRLHEYATTSIKSVVERYNSCKEEHERLMNPESDVNFWQREAEILRQQVHNLQENHRKLMGEQLYGLSVKNLQDIENQLEISLRGVRMKKGNSIHQQNVQLYKKVNLIQQQNMQLCNELYGTTDAAVASRNAFISYQEDHPQAMTQLQLSQPELDAHETSGSATR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1039 216 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lele54g1039 216 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele54g1039 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Lele54g1039 216 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele54g1039 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele54g1039 216 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Lele54g1039 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele54g1039 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele54g1039 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele54g1039 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele54g1039 216 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele54g1039 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele54g1039 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele54g1039 216 Coils Coil 86 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1039 Lele-ChrLele54 16481570 16485900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1039 1 214 MADS-box Gene Family AT4G37940 57.477 1.09e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele54g1039 K-box 8.8e-22 No_clan