Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1032 ATGGAGCTGGCAAGTTATGTATTTTGCAGAGAGGTGTTTTCATTTTGGGAAGAGAAGATGAAGAAGATGGGTGAGATAAGGAAACGGGTAATCTTGTTGTGGTGGTTAGGAATGACTCTGGAGTTATGCTTCTTGTTGCAGCTGGGTGCTTGTTTCTCATACGACGAGACCTCAGTTAGAAGAGTGTTGAGGGGAATAAACACTTCAAAACCCAGACCTTCAATTTCTGCAGTTAAGCTGAATACAGAAGATCATGGAAAAGTGGCGATTGAGAATGGCATTGTTCAGGTCACTCTGTCCAGCCCCGAGGGGTATATTCTCAGCGTATCATATGATGGAATCGACAATGTACTAGAATCTCGCAACGAAGAACAAGACAGAGGGTATTTTGATGTGGTCTGGAATAAGCCCGGGGGAAACAGTACTTTTCAGAAAATCCATGGGACCGAATTTTCAGTTGTATCCGTGGACGACAACCAAGTGGAGATTTCTTTTGTAAGAACATGGACGCCTTCCCTGGAAGGCGAAAATGTCCCCATGAACATAGACCAAAGGTATGTATTGCGAAGAGGTGATTCTGGGTTTTACTCTTACACAATATTTGAACGACCAGAAGGATTTCCAGCAGTGGAAGTTGATCAAATCAGGAATGTTTTCAAGCTGCAGGAAGAAAGATTCATCTATATGTCTATATCAGACACAAGGCAAAGGTACATGCCAACCATGAAAGACAGAGAAACAGGACAACCTCTGGCTTATCCTGAAGCTGTTCTCTTAACCAATCCATCTAATGAAGACTTTAGAGGAGAGGTGGACGACAAATATCAGTACTCTTGTGAGAATAAAGACAACACAGTGCATGGTTGGATTCGCGTTGATGCTGAAGCCCCCGTGGGCTTTTGGGTAATTACGCCCAGTAACGAGTTTCGCAATGCTGGGCCCATCAAACAAGACCTCACCTCTCACGTGGGCCCATTTGCCCTCTCCATGTTTGTGAGCACTCACTACGCCGGGAAGGAGGTAACTATGGAATTTCAAGAAGGAGAGACTTATAAGAAGGTTTTCGGCCCTATTTTCGTGTATCTTAACTCTGTTTCAAGCCCTGAGAATCCACTCACACTCTGGACAGATGCTGTTCAACAGATGTCAAAGGAAGTCAAAAGTTGGCCTTATGATTTCCCTCAATCACAAGCTTACAATCCACCCACTCAACGTGGAAGCGTTGTTGGAAGATTACTGGTTCAAGATTGGTATATCAGAGGAGGCAGATTTCTCTATGCTGACTCTGCATATGTTGGTCTTGCACTTCCCGGTGCTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGACCCAAGCAAACAAGAAGGGCTATTTTGTGATAAACAATGTTGTTCCTGGAGATTACAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAGATATAATGCTACAATCACCATCACACCAGGATGTGTAATCAAATTGGATTCGCTTGTATATAATCCGCCGAGAAGTGGATCCACTGTTTGGGAAATTGGAATCCCAGATCGCTCTGCTGCAGAATTCTATATCCCAGATCCTTACCCTACACTCATGAACAGATTATACAATGAACAACCGAAAGAAAAGTTTAGACAATATGGATTATGGGAACGTTATGCTGATTTATTTCCAAACAGTGATCTAGTCTACACTGTTGGTGTTAGTTCATATGATCAAGATTGGTTCTATGCTCATGTTACAAGGAGCACTGGAAATAAGACGTACCAGGCAACAACATGGCAGATTAGATTTAATCTTCAAAATGATCCATTCAAAGGAAATTACACCCTGAAACTAGCCTTAGCTGCAGCCTCTAATTCTAACCTAAAGATCTGGATGAATGGGCAAGGTAATGTTCCTGCTTTGTTTGAAACTGGGAAATTTGGAGGAGACAGTGCCATATCAAGGCATGGAATCCATGGATTGTACTGGTTATACAGCATTGAAGTTCCAAGCGATGTTTTAGTGAAAGGGAATAATACAATCTATTTACAACAGTCATTGGCCATAAGTCCTATTCAAGGAGTTATGTATGACTATATACGTTTAGAAAGACCACCAACTCTAATAAGGACTTGA 2139 0.4231 MELASYVFCREVFSFWEEKMKKMGEIRKRVILLWWLGMTLELCFLLQLGACFSYDETSVRRVLRGINTSKPRPSISAVKLNTEDHGKVAIENGIVQVTLSSPEGYILSVSYDGIDNVLESRNEEQDRGYFDVVWNKPGGNSTFQKIHGTEFSVVSVDDNQVEISFVRTWTPSLEGENVPMNIDQRYVLRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLQEERFIYMSISDTRQRYMPTMKDRETGQPLAYPEAVLLTNPSNEDFRGEVDDKYQYSCENKDNTVHGWIRVDAEAPVGFWVITPSNEFRNAGPIKQDLTSHVGPFALSMFVSTHYAGKEVTMEFQEGETYKKVFGPIFVYLNSVSSPENPLTLWTDAVQQMSKEVKSWPYDFPQSQAYNPPTQRGSVVGRLLVQDWYIRGGRFLYADSAYVGLALPGAAGSWQRESKGYQFWTQANKKGYFVINNVVPGDYNLFAWVPGFIGDYRYNATITITPGCVIKLDSLVYNPPRSGSTVWEIGIPDRSAAEFYIPDPYPTLMNRLYNEQPKEKFRQYGLWERYADLFPNSDLVYTVGVSSYDQDWFYAHVTRSTGNKTYQATTWQIRFNLQNDPFKGNYTLKLALAAASNSNLKIWMNGQGNVPALFETGKFGGDSAISRHGIHGLYWLYSIEVPSDVLVKGNNTIYLQQSLAISPIQGVMYDYIRLERPPTLIRT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1032 712 FunFam Rhamnogalacturonate lyase B 401 501 - -
Lele54g1032 712 Pfam Polysaccharide lyase family 4, domain II 428 500 IPR029413 -
Lele54g1032 712 Pfam Polysaccharide lyase family 4, domain III 514 703 IPR029411 -
Lele54g1032 712 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 80 707 - -
Lele54g1032 712 SUPERFAMILY Galactose-binding domain-like 511 704 IPR008979 -
Lele54g1032 712 SUPERFAMILY Starch-binding domain-like 401 502 IPR013784 GO:0030246
Lele54g1032 712 Gene3D - 511 704 - -
Lele54g1032 712 Gene3D - 401 502 - -
Lele54g1032 712 Pfam Rhamnogalacturonate lyase family 77 271 IPR010325 -
Lele54g1032 712 CDD RGL4_M 404 504 IPR029413 -
Lele54g1032 712 SUPERFAMILY Galactose mutarotase-like 82 371 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele54g1032 712 CDD RGL4_N 81 368 - -
Lele54g1032 712 Gene3D - 80 384 IPR014718 GO:0030246
Lele54g1032 712 CDD RGL4_C 516 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1032 Lele-ChrLele54 16447672 16452109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1032 75 706 Polysaccharide Lyase AT1G09890 55.660 0.0 730
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1032 54 16447672 16452109 Lele55g0428 55 2660893 2665593 hybridization
Lele54g1032 54 16447672 16452109 Lele56g0405 56 3056107 3060466 hybridization