Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1031 ATGAAGTTAGGAGAGATAAGGAAACGAGTTCTCTTGTGGTGGTGGTTTGGAATGAATATGCAGCTCTTCTTTTTGCAATGTGGTTGTTCTGACAACAACATCTTAGATAGCAGCAGAAAGATGCTGGGGAGAAATATGAACAGTACTACAAAACCCAGTTCTGCAGTTAAGCTGAATACAGAACATCATGGGAAAGTGGTTATTGACAATGGCATAGTCCAAGTCACTCTGTTAAGACCCGAGGGGAATGTCGTGGGAATCTCATATAATGGAATCGACAATGTACTAGAATCTCGTAATGATGACCAAGACAGAGGGTATTTTGATGTGGTTTGGAAGAAACCAAGAGAAAATAATCATCATCATCATGATCAAAGAATCGACGGGACAAAGTTTACAATCGTAGCAGCAGACAAAGATCAAGTGGAGATTTCGTTTATAACAACATGGAAATCTTCCATGGAAGGCAAAAGTGTCCCCATCAACGTAGACCAAAGGTATATATTGCGACGAGGTAGTTCTGGATTCTACTCTTACATTATATTCGAGCGTCCAGAAGGATTTCCAGCGGTGGAGGTTGAGCAAATCAGGAGTGTTTACAAGCTTCAGGAAGACAGGTTCCACTATATGGCTATATCAGACACTAGGCAAAGATACATGCCGACAATGGAAGATAGAAAAAGAGGGAAAACCTTAGCTTATACTGAAGCTGTTCTCTTAACCAACCCATCCAATGAAATCTTTAAAGGAGAGGTGGACGACAAATACCAGTATGCTTGTGAGAACAAAGACAACAGAGTACATGGTTGGATTAGCATGAATTCTGATGCAGACATGGGGTTCTGGATAATAACACCTAGCAATGAGTTCCGCAATGGTGGGCCCATCAAGCAAGATCTTACCTCTCATGTTGGCCCCTTTGCCCTCTCTATGATTATGAGCATGCACTTGGCTGGGAAGGATTTAGCCATGGAATTTCGAGAAGGGGAGACGTATAAGAAGGTTTTTGGCCCTGTTTTTGTGTATCTTAACTCCATTTCGAGCAATGTCAATGCACAAACGCTCTGGCTAGATGCTGTGCAACAAATGTCCAAGGAAGTCAGAAGCTGGCCTTATGATTTCCCAAAATCACAAGATTATATTCCAGCCACCAAACGTGGAACTGTGACTGGAAGATTACTGGTTCAAGATCGGTATATCCAAGGAGGCAGGTTTCAGAATGCTAACTCTGCTTATGTTGGTTTAGCTTTGCCTGGTGTTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAGTTCTGGATTCAAGCTGACAAGAAGGGCTACTTCGCGATAAAGAATGTTATACCGGGAAAGTATAATTTGTTTGCATGGGTTCCAGGCTTTATTGGTGATTATACATATGATACAACAATCACCATCACACCAGGTATGGCATTTTCTTCGACAACCTTCTGGTTTGGTGTAAACCCTAATCTCAACCTGCTCATTCACATAACAAATTGTTGTGTATGTGTAGGATGTTGGATCAAATTGGGTTTTCTGGTATACAGTCCTCCAAGAAATGGTCTTACCGTATGGGAAATTGGAGTCCCAGATCGCTCAGCAGCAGAATTCTATATCCCAGACCCAAATCATAAACTCCTGAACAAGTTATACAACAATCATCCCAGAGAAAAGTTTAGACAATATGGATTGTGGGCACGTTATGCTGAATTGTATCCAAAAAATGATTTAGTTTACAATGTTGGTGTTGACTCTCATGATAAGGATTGGTTCTTTGCTCATGTTACAAGGAACATAGGAGATAACAGGTATCAACCAACTACATGGCAGATTAAATTTGAACTTCAAAGACGCCATCTATTAGTAGGAAATTACACCCTACAACTAGCTTTAGCATCAGCCACTAATTCTAAATTGCAGGTTTGGTTTAATGAGCAATGTGAGAAGCGTCCTCTATTTAAAACTGGAATGTTAAGAGGAGATAATGCCATAGCAAGGCATGGAATCCATGGATTATATTGGTTATTCAGCATTGATGTTCCAAGTGATCTTTTAGTGGAAGGGAACAACACTGTCTATTTAAAACAGCCACTAGCCATTAATCCTTTCCAAGGACTTATGTACGATTATTTACGTCTAGAAAGACCTCCCACTCTAAGAATTTGA 2172 0.4061 MKLGEIRKRVLLWWWFGMNMQLFFLQCGCSDNNILDSSRKMLGRNMNSTTKPSSAVKLNTEHHGKVVIDNGIVQVTLLRPEGNVVGISYNGIDNVLESRNDDQDRGYFDVVWKKPRENNHHHHDQRIDGTKFTIVAADKDQVEISFITTWKSSMEGKSVPINVDQRYILRRGSSGFYSYIIFERPEGFPAVEVEQIRSVYKLQEDRFHYMAISDTRQRYMPTMEDRKRGKTLAYTEAVLLTNPSNEIFKGEVDDKYQYACENKDNRVHGWISMNSDADMGFWIITPSNEFRNGGPIKQDLTSHVGPFALSMIMSMHLAGKDLAMEFREGETYKKVFGPVFVYLNSISSNVNAQTLWLDAVQQMSKEVRSWPYDFPKSQDYIPATKRGTVTGRLLVQDRYIQGGRFQNANSAYVGLALPGVAGSWQRESKGYQFWIQADKKGYFAIKNVIPGKYNLFAWVPGFIGDYTYDTTITITPGMAFSSTTFWFGVNPNLNLLIHITNCCVCVGCWIKLGFLVYSPPRNGLTVWEIGVPDRSAAEFYIPDPNHKLLNKLYNNHPREKFRQYGLWARYAELYPKNDLVYNVGVDSHDKDWFFAHVTRNIGDNRYQPTTWQIKFELQRRHLLVGNYTLQLALASATNSKLQVWFNEQCEKRPLFKTGMLRGDNAIARHGIHGLYWLFSIDVPSDLLVEGNNTVYLKQPLAINPFQGLMYDYLRLERPPTLRI 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1031 723 SUPERFAMILY Galactose-binding domain-like 523 716 IPR008979 -
Lele54g1031 723 CDD RGL4_C 527 716 - -
Lele54g1031 723 FunFam Rhamnogalacturonate lyase B 382 482 - -
Lele54g1031 723 Gene3D - 523 714 - -
Lele54g1031 723 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 719 - -
Lele54g1031 723 Pfam Rhamnogalacturonate lyase family 48 252 IPR010325 -
Lele54g1031 723 Gene3D - 58 363 IPR014718 GO:0030246
Lele54g1031 723 Gene3D - 381 483 - -
Lele54g1031 723 Pfam Polysaccharide lyase family 4, domain III 525 715 IPR029411 -
Lele54g1031 723 Pfam Polysaccharide lyase family 4, domain II 409 477 IPR029413 -
Lele54g1031 723 SUPERFAMILY Galactose mutarotase-like 60 347 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele54g1031 723 SUPERFAMILY Starch-binding domain-like 380 478 IPR013784 GO:0030246
Lele54g1031 723 CDD RGL4_M 385 464 IPR029413 -
Lele54g1031 723 CDD RGL4_N 59 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1031 Lele-ChrLele54 16442729 16446074 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1031 54 718 Polysaccharide Lyase AT1G09890 52.976 0.0 700