Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1030 ATGTTCGGATACGAAAGTGCTGTACGTAAGATTGAAGACTCTCATCCACCTGTCACTTTGCAACAAAGCGATGACAAGGTGGTGATGTATAATGGGATCCTTAGCGTTACGGTGTCAAGGCCAGACGGCAATTTGTTGGGAGTGTCATATAATGGGATTGATAATCTTCTTGGACCGCTTAATGATCTTGAAGATAGAGGGTATTGGGACTTTTCTTGGAACCCACTAGGTTACCCCAGTATCTATCACAGGTATATTTTACGTAGAGGCAGCTCAGGATTATATTCATATGCCATATTGGAGCGTCCAGAAGATTTTCCTGCAATTCGGGTGGATGTCTTTAGGCTCGTTTACAAGCTCAACCAATACCTGTTCCACTACATGGCTATAACAGACGAAAGGCAAAGAGAAATGCCTACTGCTGATGATAGATCCAAAGGCCAGACCCTTGATTATCCTGAAGCTGTCCGATTAACCCATCCTAGTGACCCTAAATTCTTAGGAGAGGTGGATGATAAATACATGTACTCGGTTGAGAACAAAGACAACAAAGTCAGCGGATGGGTGTCTTTTAACACTACCAATTCTTCATCAGTTGGCTTCTGGATGATTACCCCCACCAACGAATTCCGTAACGGTGGACCTACCAAGCAAAGTCTCACCTGTCATGTTGGTCCTGTCACCCTCAACTCTTTCCTGAGCCCCCACTATGCTGGGAAGGACATATCTATGATATTTAAAGAAGAGGAGACCTATAAGAAGGTGGTCGGACCCACTTTTCTGTACCTCAACACTGTTCCAAACCCCCATGATTCTCAAACTCTCTGGCAGGATGCTAAAAACCAGTTGCAAAAGGAAGTTGATAGCTGGCCCTATGATTTCCCTCAATCAAAAGATTTCATTCCATCCAATCAACGTGGAAAAGTGTCAGGACAATTAATAATTGAATGGTACGCGACAGGTGCTACGTCATTTAACGCTAGTAATGCTTACGTTGGTCTAGCCCTCCCAGGCGATGAAGGATCATGGCAATCAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCTGAAAACGGCGGCTTCTTCACTATAGAAAATGTTTTGCCTGGGGACTACAACTTGTATGCTTGGGTCCCTGGCATTCTTGGTGATTACAAATATGACTTTGATATTATCGTCAAACCAGGAGATGTCATCCAATTGGGTCAATTATATTATTGGCCTCCAAGAAATGGTCCTACGGTTTGGGAAATTGGGATTCCTGATCGATCAGCTCAAGAGTTTTATGTGCCAGACCCATATCCTAACCTCATTAACAACTTATACATAGGAAAGGCCAAAGACAGGTTTAGACAGTACGGTTTGTGGAAACGTTACGCTGAATTATATCCAACTAATGACCTCGTTTACCATGTTGGTGTTAGTGATTATTCCAAAGATTGGTTCTATGCTCAAGTCACCAGGGACCTAGGAAATGGCACATACAGTGCAACAACATGGGAGATAAGATTTGAACTGCCATTTATCATTCCAGGAAGTTACACACTACATATTGCCTTAGCATCATCCACTAATGCTCACTTATTTGTAAGTGCATCCACGCCTAGCTTGTGCATCGCGGCTCCATTGCGAAGCTCTCTTCATCAATTGTGCTCAGTAAATTCCATCAGAATTCAAATGGCTTCACAACCAGAGACGGAGCATCCCAGGAAGGCCTTCGGCTGGGCTGCTAGGGAGACGTCTGGGGCTCTCTCCCCTTTCCATTTCTCTAGAAGGGAAACTGGAGAGAAAGATGTGACGTTCAAAGTGCTGTACTGCGGGATTTGCCACTCAGACCTACACATGATTAAGAATGAGTGGGGCAGTTCCATCTATCCACTTGTACCCGGGCATGAAATTGTCGGAGTAGTAACAGAGGTGGGATGCAAGGTTGAGAAGTTCAAAGTTGGAGACAGGGTAGGTGTGGGATGCATGGTTGGTTCATGCGGCGGCTCGAGCCAAAGCTGTGCGGAAAATCTGGAAAATTACTGCCCAAAAATGATTCTCACGTATGGTGCCAAGTATGTGGATGGTAGCATCACATATGGAGGTTACTCTGACCTGATGGTTGCGGATGAGCGCTTTGTGGTTCGCATTCCAGATAGCCTTCCTCTTGATGCAGCGGCTCCTCTGCTCTGTGCTGGGATCACTGTGTATAGTCCTTTGAGGCATTTTGGACTAGACAAGCCTGATATTCATGTTGGTGTGGTTGGTCTTGGTGGTTTAGGACACATGGCGGTGAAATTTGCCAAGGCATTTGGTGCTAAGGTGACTGTAATAAGTACATCACCTGATAAGGAGGAGGAAGCTATAAAAACTCTAGGAGCTGACTCCTTTGTGGTCAGCCGGGAGCAAGATCAGATGGAGGGTGTAATGGGTACACTTGATGGGATCATTGACACAGTTTCTGCTGTGCATCCTCTCATGCCCTTGATTGCTCTGTTGAAGACTCAAGGGAAACTCGTAATGGTGGGAGCCCCAGAGAAGCCTCTAGAACTCCCAGTCGTCCCTTTAATTATGGGGGGGAAGTTAGTAGGAGGGAGTGCCATTGGAGGGATGAAGGAGACACAAGAAATGGTTGATTTTGCTGCTAAGCACAATGTGAAACCTGAGATTGAGGTTGTTCCAATTGACTATGTCAACATCGCAATGGAGCGTCTCGCCAAGGCAGATGTGGAGTATCGATTCGTCATCGACATTGGGAATACACTGAAACCAAGCTCTTAA 2766 0.4537 MFGYESAVRKIEDSHPPVTLQQSDDKVVMYNGILSVTVSRPDGNLLGVSYNGIDNLLGPLNDLEDRGYWDFSWNPLGYPSIYHRYILRRGSSGLYSYAILERPEDFPAIRVDVFRLVYKLNQYLFHYMAITDERQREMPTADDRSKGQTLDYPEAVRLTHPSDPKFLGEVDDKYMYSVENKDNKVSGWVSFNTTNSSSVGFWMITPTNEFRNGGPTKQSLTCHVGPVTLNSFLSPHYAGKDISMIFKEEETYKKVVGPTFLYLNTVPNPHDSQTLWQDAKNQLQKEVDSWPYDFPQSKDFIPSNQRGKVSGQLIIEWYATGATSFNASNAYVGLALPGDEGSWQSESKGYQFWTQAENGGFFTIENVLPGDYNLYAWVPGILGDYKYDFDIIVKPGDVIQLGQLYYWPPRNGPTVWEIGIPDRSAQEFYVPDPYPNLINNLYIGKAKDRFRQYGLWKRYAELYPTNDLVYHVGVSDYSKDWFYAQVTRDLGNGTYSATTWEIRFELPFIIPGSYTLHIALASSTNAHLFVSASTPSLCIAAPLRSSLHQLCSVNSIRIQMASQPETEHPRKAFGWAARETSGALSPFHFSRRETGEKDVTFKVLYCGICHSDLHMIKNEWGSSIYPLVPGHEIVGVVTEVGCKVEKFKVGDRVGVGCMVGSCGGSSQSCAENLENYCPKMILTYGAKYVDGSITYGGYSDLMVADERFVVRIPDSLPLDAAAPLLCAGITVYSPLRHFGLDKPDIHVGVVGLGGLGHMAVKFAKAFGAKVTVISTSPDKEEEAIKTLGADSFVVSREQDQMEGVMGTLDGIIDTVSAVHPLMPLIALLKTQGKLVMVGAPEKPLELPVVPLIMGGKLVGGSAIGGMKETQEMVDFAAKHNVKPEIEVVPIDYVNIAMERLAKADVEYRFVIDIGNTLKPSS 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1030 921 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 630 644 IPR002328 GO:0008270|GO:0016491
Lele54g1030 921 Gene3D - 575 913 - -
Lele54g1030 921 FunFam Cinnamyl alcohol dehydrogenase 727 883 - -
Lele54g1030 921 Gene3D - 301 398 - -
Lele54g1030 921 SMART PKS_ER_names_mod 582 911 IPR020843 GO:0016491
Lele54g1030 921 Pfam Rhamnogalacturonate lyase family 81 170 IPR010325 -
Lele54g1030 921 Pfam Rhamnogalacturonate lyase family 14 78 IPR010325 -
Lele54g1030 921 SUPERFAMILY Starch-binding domain-like 303 402 IPR013784 GO:0030246
Lele54g1030 921 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 716 882 IPR036291 -
Lele54g1030 921 Pfam Zinc-binding dehydrogenase 754 877 IPR013149 -
Lele54g1030 921 Pfam Polysaccharide lyase family 4, domain II 328 400 IPR029413 -
Lele54g1030 921 SUPERFAMILY Galactose mutarotase-like 20 271 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele54g1030 921 Pfam Alcohol dehydrogenase GroES-like domain 597 711 IPR013154 -
Lele54g1030 921 Gene3D - 75 279 IPR014718 GO:0030246
Lele54g1030 921 CDD CAD1 573 912 - -
Lele54g1030 921 CDD RGL4_M 305 404 IPR029413 -
Lele54g1030 921 FunFam Uncharacterized protein 575 726 - -
Lele54g1030 921 Pfam Polysaccharide lyase family 4, domain III 414 531 IPR029411 -
Lele54g1030 921 SUPERFAMILY GroES-like 579 743 IPR011032 -
Lele54g1030 921 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 81 533 - -
Lele54g1030 921 Gene3D - 727 883 - -
Lele54g1030 921 SUPERFAMILY Galactose-binding domain-like 411 525 IPR008979 -
Lele54g1030 921 CDD RGL4_N 23 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1030 Lele-ChrLele54 16432534 16440213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1030 14 546 Polysaccharide Lyase AT1G09890 49.650 2.82e-180 533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1030 54 16432534 16440213 Lele55g0429 55 2668907 2680141 hybridization
Lele54g1030 54 16432534 16440213 Lele56g0407 56 3067434 3071565 hybridization