LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele54g1023	ATGGAATTCAGAGGGAAAGGAGGAAGAGGAGAGGCGTGCGAGGAGGAGGCATCTCCGAGAGGCGTGCTGGAGATGACGGGGGAGTCAGATCGGGGTAGTAGCGGATGCAGCACGTGCTCAGGGGAGAGGCCGCCGCCGGCGTGGGGGCAGGGCCAAATGCCTCAGTGGAAGGGAGTGATGGACGCGTTGAGGATAAACTCGGTGAAGAGGCTGTCGGCGATACCGTTGTTCGCGTCCACGTACATGATATCTCGGAAGAGCCTGAAGAAATTGGCGCGCATCAGGAGCGCAGAAGACGCCATAGATCTTATTTCTTTGGCCACCAAATCCTCCTGGAAAACCTTCTCTTACACCGACCTTGCCATTGCCACCCAAGATTTCAGTCACAAGAACATGATCGGGAAAGGTGGGCATGCAGAAGTGTACAAAGGACGCTTACCCGATGGGCAAATCGTAGCAGTAAAGAAGCTTGTGAATGAGGAAAAGGACGACGCAGATGACACCGGTGATTTCTTGACGGAGCTCGGAATCATCGCCCACATCAACCATCCTAGTTGTTGCGGGTTGATTGGCTTCGGCATCGACAAGGGCCTCTTCTTGGTCCTTCACTATGCTGCTCACGGCAGTTCCAAAAAGATGGAGTGGAATGTTAGGTTCAAGGTAGCCATTGGAATTGCCCAGGGGCTGCAATATCTTCATCATGAATGCCCAAGACGAATCATTCACAGAGACATCAAGGCCTCCAACATCTTGCTCGATGAAAACTACGAACCCGAGATTTCAGATTTTGGATTAGCAAAGTGGCTCCCAGAAAAGTGGGACCACCATGTTGTCTTCCCTATAGAAGGCACATTTGGGTATCTAGCTCCAGAGTATTTTATGCATGGACTTGTGGATGAAAAGACCGATATTTTCGCTTATGGGGTTTTGTTGCTTGAGATCATTACAGGTCGTATGGCCGTTGATTCTGATAGTAGGCAAAGCCTTGTGATCTGGGCGAAGACCCTACTGGACGCGAAAAACATGAAGGAATTAGCAGACCCTAGATTAGAAGAAGATTATGACCCTATAGAAATGGAGAGGGCCATGGTTACTGCTTCCGTGTGTGTAAACCACTCAGCTTCCAAGCGTCCCTTAATGAATCGGGTAGTGCAGATGCTGAAGGGAGAAGAAGGACCTGTTGAAGCCAAGCCACAAAAATTCACAGCCCCAAGATCCCTCATGTTGGATGCCTGTGATCTTGAAGATTATACTTGCTCCAGTTACTTGAACGATCTCAATCGTCACAGGCAATTAATCATGGAATGA	1308	0.4962	MEFRGKGGRGEACEEEASPRGVLEMTGESDRGSSGCSTCSGERPPPAWGQGQMPQWKGVMDALRINSVKRLSAIPLFASTYMISRKSLKKLARIRSAEDAIDLISLATKSSWKTFSYTDLAIATQDFSHKNMIGKGGHAEVYKGRLPDGQIVAVKKLVNEEKDDADDTGDFLTELGIIAHINHPSCCGLIGFGIDKGLFLVLHYAAHGSSKKMEWNVRFKVAIGIAQGLQYLHHECPRRIIHRDIKASNILLDENYEPEISDFGLAKWLPEKWDHHVVFPIEGTFGYLAPEYFMHGLVDEKTDIFAYGVLLLEIITGRMAVDSDSRQSLVIWAKTLLDAKNMKELADPRLEEDYDPIEMERAMVTASVCVNHSASKRPLMNRVVQMLKGEEGPVEAKPQKFTAPRSLMLDACDLEDYTCSSYLNDLNRHRQLIME	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele54g1023	435	SUPERFAMILY	Protein kinase-like (PK-like)	111	405	IPR011009	-
	Lele54g1023	435	MobiDBLite	consensus disorder prediction	1	18	-	-
	Lele54g1023	435	Gene3D	Transferase(Phosphotransferase) domain 1	203	401	-	-
	Lele54g1023	435	Pfam	Protein kinase domain	128	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele54g1023	435	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	200	400	-	-
	Lele54g1023	435	SMART	serkin_6	127	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele54g1023	435	ProSiteProfiles	Protein kinase domain profile.	127	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele54g1023	435	Gene3D	Phosphorylase Kinase; domain 1	101	202	-	-
	Lele54g1023	435	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	240	252	IPR008271	GO:0004672\|GO:0006468
	Lele54g1023	435	MobiDBLite	consensus disorder prediction	1	52	-	-
	Lele54g1023	435	ProSitePatterns	Protein kinases ATP-binding region signature.	133	156	IPR017441	GO:0005524
	Lele54g1023	435	PANTHER	OS08G0249100 PROTEIN	15	405	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele54g1023	Lele-ChrLele54	16381053	16383922	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele54g1023	84	387	Trihelix Transcription Factor Family	AT5G38560	42.025	1.88e-68	228

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Lele54g1023		Pkinase	2.5e-37	CL0016