Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1022 ATGGCTCGTGCTACTAACTGGCTATCGTTTTCGTTGTCGCCGATGGAAATGTTGAGGTCGACCAACTCGCAGTACCTTCAATACGACGCCGCTTCTGCTGCTCCTCACTACTTGGTCGAAAACTTCTATGCCAACGGATGGGGAAACCACAAGCCCCAGGTGCTGTACACAGAAGTAGAGCTTAACGAGAATAAAGAAAGTCAAGCTGCAGGGAACATGGTGGAATCATCATTTGCCCCAGGTTTCATGGAACCCCAGAATCAGGAGCAGCCAGTGCCGAAACTCGAGGATTTTCTGGGAGATTCTTCGTCTTCTATTATGCGTTACTCTGATAGTCAAACGGATACTCAAGGTTCGTCGACCCTGACTCATATATACGAGCAGGGCTCGGCTTACTTCAGCGACCAGCAAGATCTGAAAGCCATCGCCGGGTTCCAAGCTTTCTCATCCAACTCTGGCTCCGAAGTGGATGACTCGGCCTCTATCGGCAAAGCTCAACACGCTGGTAGCGAGTTCGCGGCTCACTCGATTGATTCGTCTGGTAATGAGCTGACCTTCTCAAGTGGCACCACCACTGGAACTCTGTCCCTCGGCGTCACCACTACCCCACAATGTGGGGCCGATCAGAAAACCATAGTTCCGGTGGAATCCGATAGCTCCAAGAAGATTGCCGATACTTTCGGCCAAAGAACTTCGATTTACAGAGGAGTCACCAGACACCGATGGACGGGTAGATATGAAGCGCATCTCTGGGATAACAGCTGTAGGAGAGAGGGTCAGGCCAGAAAAGGGCGTCAAGGTGGATATGACAAAGAAGACAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGCCCCACCGCCACCACCAACTTCCCAGTTTCCAATTATGCAAAGGAAATGGAAGAGATGAAGCATGTAACAAAGCAAGAATTTATCGCCTCCCTGCGAAGGAAAAGTAGCGGATTTTCCAGGGGAGCTTCTATATACAGGGGAGTGACAAGGCATCACCAACAAGGTAGATGGCAAGCTAGAATTGGCCGTGTTGCAGGGAACAAGGATCTGTACCTTGGAACATTTGCCACTGAAGAGGAAGCAGCTGAGGCATACGATATTGCGGCCATAAAGTTTAGGGGTGCAAATGCTGTAACCAACTTTGAGATGAGTAGATATGACGCTGAAGCCATCATGAAGAGTTCTCTTCCGATTGGCGGTGCGGCGAAACGCTTGAAGCTTTCGCTCGAATCCGAGCAGAAAGCGACTCTGAACAATAATAGCCAGCCAATCCAATGCACCAACATGATGAGTAACAGCATCAACTTCTCACCAATTCAGGCAGTTTCCTCTGTTCCTTGTGCAATCCCATTTCATCCCGCTACTACCGCATACTATCACCACAACCTCTTGAATCATTTTTGTCCTTCCGATGCCGTAGAATCTGCCGTATCTAGCCCTCCTGTGACTCCATATCCTAATACTCTGCCAGCACCTTCCGAGTTCTTTATATGGCCTCCTCATCATCAGACATATTGA 1542 0.4942 MARATNWLSFSLSPMEMLRSTNSQYLQYDAASAAPHYLVENFYANGWGNHKPQVLYTEVELNENKESQAAGNMVESSFAPGFMEPQNQEQPVPKLEDFLGDSSSSIMRYSDSQTDTQGSSTLTHIYEQGSAYFSDQQDLKAIAGFQAFSSNSGSEVDDSASIGKAQHAGSEFAAHSIDSSGNELTFSSGTTTGTLSLGVTTTPQCGADQKTIVPVESDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYAKEMEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDAEAIMKSSLPIGGAAKRLKLSLESEQKATLNNNSQPIQCTNMMSNSINFSPIQAVSSVPCAIPFHPATTAYYHHNLLNHFCPSDAVESAVSSPPVTPYPNTLPAPSEFFIWPPHHQTY 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1022 513 SMART rav1_2 233 302 IPR001471 GO:0003700|GO:0006355
Lele54g1022 513 SMART rav1_2 332 396 IPR001471 GO:0003700|GO:0006355
Lele54g1022 513 ProSiteProfiles AP2/ERF domain profile. 332 390 IPR001471 GO:0003700|GO:0006355
Lele54g1022 513 CDD AP2 331 392 IPR001471 GO:0003700|GO:0006355
Lele54g1022 513 CDD AP2 232 298 IPR001471 GO:0003700|GO:0006355
Lele54g1022 513 FunFam AP2-like ethylene-responsive transcription factor ANT 232 298 - -
Lele54g1022 513 ProSiteProfiles AP2/ERF domain profile. 233 296 IPR001471 GO:0003700|GO:0006355
Lele54g1022 513 FunFam AP2-like ethylene-responsive transcription factor 331 392 - -
Lele54g1022 513 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 429 - -
Lele54g1022 513 SUPERFAMILY DNA-binding domain 232 298 IPR016177 GO:0003677
Lele54g1022 513 Gene3D AP2/ERF domain 233 298 IPR036955 GO:0003700|GO:0006355
Lele54g1022 513 Gene3D AP2/ERF domain 332 392 IPR036955 GO:0003700|GO:0006355
Lele54g1022 513 PRINTS Ethylene responsive element binding protein signature 372 392 IPR001471 GO:0003700|GO:0006355
Lele54g1022 513 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Lele54g1022 513 Pfam AP2 domain 233 288 IPR001471 GO:0003700|GO:0006355
Lele54g1022 513 Pfam AP2 domain 332 382 IPR001471 GO:0003700|GO:0006355
Lele54g1022 513 SUPERFAMILY DNA-binding domain 331 392 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1022 Lele-ChrLele54 16376196 16380149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1022 47 507 AP2-EREBP Transcription Factor Family AT5G10510 56.007 3.04e-169 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele54g1022 AP2 1.2e-08 CL0081