Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1008 ATGGAGCCAGAAAAGGGCACCGCCGGACGCGGGTCCGGACTCGAACCCGGAAACTTACGCTTTCTCGGCTTATGCACGTCGCTACTTCGTCTCCGTAACTTCTCCAGATGCCGCGAGTTCGCTCTCAACATCCAAAGATCCGATCCAGACATCTCCGACACCGTCGATCGAATCCTCGCAATTACTAACGTTGTTCTCGCCGCGGAGAGGCGACTTCATGGCCACTTCGACTGGTACGCTATTCTCCAACTACGCCGTAATGACTCCGGGAACTACCAACTCATACGGGATCAATTTAAGAGGCTCGCGCGTCTCTTGAACCCAAACAGAAATGAGTTTGCATCCTCAGATGAAGCGTTCGTGCTCGTGCGCGACGCATGGCGCGTGCTTTCGGATCCGGAAAAGAAAGCCGAATACGAGCAAGCGATTGGCGATTGCGTACCAGAAGAACATTACAAACAGAGTAGTGGGAGCAAGCAAGAGGGGTTTGGCGTTTTACCCAGAAATGGGCGTAACGTGAATGTAGGTGAACAGAAAGCCACATTTTGGACTATGTGCCCTTATTGTTACTCTTTGCATGAGTATGACAAAATATACGAAGATTGCCCTCTGCGGTGCCAGAAATGCAGGATGGTCTTTCAGGGGATATCGTTGAAGCCTCCGACGGATGACATGTTAGTGACGGGGAAAGACCAATACTATTGCTGCTGCATGCATGTACCTTTGAGGTATCCACCGTCGCAACACTCAGAGGTGAAGGAAAACAAGTCCGGTATTGCAAAACCGTGGTGTATGGAAGGCTGGATTAAGAATGGAAAATATTATGCTGATACTCCTGAGGACGATGACGTTGACGATTCATCAAAGAACTGCGGAATTGGAGTAGAGGAAAGGGTTTTGCGTGCTGAGCAAGCTGGGACTGGGGGATCGTATGGAGATTTGGGAAATGGGAAGCGGCGGATGAGGGTGAAAACTGTGGCTAGAAACACAAAGAAGATGACCGGGAACAGGATGAGAAACCAGGCACATATTTCACGGGATAGTGATGCTGAATCGTTGGATTTGGATGCAGAAGATGGAAAAGAGTTTATTCTGAACATTGTTCATCTCGATGATGCTCAACCTGAAGTTGCCGTTGCTGCCTTATTATATGATATATCCTCTGATTTCAACATGCCTTTCTTTGAGATGTCCGTGTCCGTGATTCGATTTGTGGCTTCCTTTGCCAAACTTAACCCCTTGCTTCTCTCCTCTCCTCCTAATTCGAAGGGCATGCAGATTCAAAATGACTATAACTCGGAAGTATACGGGTTAAGAAGCAGCTTTTCTCGAGGAACTATCTCGGAGACATACAGAAACTCGTTCTTAAAGCCAAAATCAAAGGCAGAGATCAAATTACTCGCTGCTAAGAAACACAGTGAAGCAGAGAAGAGACGCAGGATGCGAATCAATGCTCAATATGCCACCCTCCGCACCATCCTCCCCAACTTGGTCAAAATGGACAAAGCATCGGTACTGGCGGAGACTGTAAGGCAATTAAAGGAGCTGAAGAAGAATTTATCAGAATTGGAGGCAGCTAGTGCGAGTAGTTCAGGTGAGATCACTGTGTTTCCCAGTGCAAAAGACAAGTTGAACTTGGAACACTGTAAAGATGAGGAGGGCCTCATGAAGGCGACCTTGAGTTGTGAGGATAGGCCAGGGTTGATGTCAGCCATCACAAGGGCTCTTAGGTCTGTGAAAGCCGAGGTGGTAAAGGCTGAGATGGTGAATGTAGGAGGGAGAACCAGAAATGTGTTATGGGTTCAAGGCTTGCAAAATGGAAATGAAGGGATGGTTGTCCTCAAGAGGACTCTTAAGGTTGTCATGCATAAGCCAACTTTCAAGATGCATCATCTGACTCAGTAA 1905 0.4772 MEPEKGTAGRGSGLEPGNLRFLGLCTSLLRLRNFSRCREFALNIQRSDPDISDTVDRILAITNVVLAAERRLHGHFDWYAILQLRRNDSGNYQLIRDQFKRLARLLNPNRNEFASSDEAFVLVRDAWRVLSDPEKKAEYEQAIGDCVPEEHYKQSSGSKQEGFGVLPRNGRNVNVGEQKATFWTMCPYCYSLHEYDKIYEDCPLRCQKCRMVFQGISLKPPTDDMLVTGKDQYYCCCMHVPLRYPPSQHSEVKENKSGIAKPWCMEGWIKNGKYYADTPEDDDVDDSSKNCGIGVEERVLRAEQAGTGGSYGDLGNGKRRMRVKTVARNTKKMTGNRMRNQAHISRDSDAESLDLDAEDGKEFILNIVHLDDAQPEVAVAALLYDISSDFNMPFFEMSVSVIRFVASFAKLNPLLLSSPPNSKGMQIQNDYNSEVYGLRSSFSRGTISETYRNSFLKPKSKAEIKLLAAKKHSEAEKRRRMRINAQYATLRTILPNLVKMDKASVLAETVRQLKELKKNLSELEAASASSSGEITVFPSAKDKLNLEHCKDEEGLMKATLSCEDRPGLMSAITRALRSVKAEVVKAEMVNVGGRTRNVLWVQGLQNGNEGMVVLKRTLKVVMHKPTFKMHHLTQ 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1008 634 Pfam Helix-loop-helix DNA-binding domain 471 516 IPR011598 GO:0046983
Lele54g1008 634 Gene3D - 467 526 IPR036638 GO:0046983
Lele54g1008 634 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 467 516 IPR011598 GO:0046983
Lele54g1008 634 Gene3D DnaJ domain 75 182 IPR036869 -
Lele54g1008 634 SUPERFAMILY ACT-like 558 603 IPR045865 -
Lele54g1008 634 Coils Coil 506 533 - -
Lele54g1008 634 ProSiteProfiles dnaJ domain profile. 77 143 IPR001623 -
Lele54g1008 634 CDD DnaJ 77 132 IPR001623 -
Lele54g1008 634 Pfam DnaJ domain 77 140 IPR001623 -
Lele54g1008 634 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 19 340 - -
Lele54g1008 634 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 471 533 IPR036638 GO:0046983
Lele54g1008 634 SUPERFAMILY Chaperone J-domain 74 152 IPR036869 -
Lele54g1008 634 SMART dnaj_3 76 135 IPR001623 -
Lele54g1008 634 SMART finulus 473 522 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1008 Lele-ChrLele54 16264419 16268626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1008 20 244 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.681 2.04e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele54g1008 DnaJ 7.1e-12 CL0392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g1008 54 16264419 16268626 Lele55g0451 55 2839236 2839937 hybridization
Lele54g1008 54 16264419 16268626 Lele56g0435 56 3237569 3238654 hybridization