Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1000 ATGGATTTTGAGGATCAAGAAGAGCAAGAGGAAGAGACGGGTATGGAGTCGCTGGAGATATCTCCGAGAGTGAAAATGCCTAGCCTAGCCAGTACAGTAGAAGCTATGGTGTTGCCTCAACCCACGGGCAATTATTATAACAGTAACAGTAAGGGACGATATAGAGAGTGCTTGAAGAACCACGCCGTGAGCCTCGGAGGACACGCGCTTGACGGATGTGGGGAGTTCATGCCAGCTGGAGCTGAAGGCACACTCGACGCTCTCAAATGTGCCGCCTGTAACTGCCACCGTAATTTCCACCGCAAAGAGACCGAACCATTTTTGTTAACCCCCCATTACCACCATCCCCAGCCACCGCAGTTCACGGCAGCATATTATCGAGCGCCGGCGGGGTACTTACACGTGGCGGGACAGCATAGGGGAGGGCCGGCGACACTGGCGTTGCCGTCTACATCGGGAGGAGGGGGCGGGACACAGAGCACGAGAGAGGACCAGGACGACGACGCTTCGAACCCGAGCGGAGGAGGAGGAGGGTCGTCGAAGAAGAGGTTCAGGACGAAGTTCACGCAGGAACAGAAGGATAAAATGCTGGAACTTGCAGAGAGATTGGGATGGAGGATTCAGAAGCAAGACGAAGAGTTGGTCCAGCAATTCTGTAACGAAGTTGGAGTGAAGCGTCAGGTTCTTAAGGTTTGGATGCACAACAACAAGCACACTGTGGGTAAGAAGCCCTAG 735 0.5401 MDFEDQEEQEEETGMESLEISPRVKMPSLASTVEAMVLPQPTGNYYNSNSKGRYRECLKNHAVSLGGHALDGCGEFMPAGAEGTLDALKCAACNCHRNFHRKETEPFLLTPHYHHPQPPQFTAAYYRAPAGYLHVAGQHRGGPATLALPSTSGGGGGTQSTREDQDDDASNPSGGGGGSSKKRFRTKFTQEQKDKMLELAERLGWRIQKQDEELVQQFCNEVGVKRQVLKVWMHNNKHTVGKKP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1000 244 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
Lele54g1000 244 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 181 237 IPR006455 -
Lele54g1000 244 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 239 - -
Lele54g1000 244 FunFam Zinc-finger homeodomain protein 2 168 242 - -
Lele54g1000 244 Pfam ZF-HD protein dimerisation region 53 104 IPR006456 -
Lele54g1000 244 Gene3D - 166 241 - -
Lele54g1000 244 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Lele54g1000 244 MobiDBLite consensus disorder prediction 1 22 - -
Lele54g1000 244 SUPERFAMILY Homeodomain-like 170 242 IPR009057 -
Lele54g1000 244 MobiDBLite consensus disorder prediction 1 15 - -
Lele54g1000 244 MobiDBLite consensus disorder prediction 141 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1000 Lele-ChrLele54 16220827 16221561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g1000 1 240 ZF-HD Transcription Factor Family AT4G24660 49.593 2.43e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele54g1000 ZF-HD_dimer 6.3e-30 No_clan