Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0993 ATGGAAGAAGCACTCAGGAGGCTTAACGGGTTAGCCCCGGTTCCTGAACCCGACCAGGACTCCATCTCTGACCCCTCGAAGAAGTGCCCAGCCACCTCCATCACCAAGAGGACGGCTAGAGAAAACGGCGGCACTATGAGGTACCGTGGCGTTCGGCGCAGGCCCTGGGGCCGTTACGCGGCGGAGATAAGAGACCCTCAGTCCAAGGAGCGACGGTGGCTCGGCACTTTCGACACGGCGGAGGAAGCTGCATGTGCCTATGACTGCGCCGCCCGAGCCATGCGTGGCCTCAAAGCTCGAACCAATTTCGTTTACCCGACTTCACCGCCTCCTTCTGCAACCACCGAGCATCTCTTCCCTCATTTCGCCTTCCCCAAACAATCACACAATCAAATGAACAAGAACCTTAACCCTCGTAACCGCCCTTTAGGCTGGCCTTCTTCTAGCTCTAACCCTCACGTCGCTGATTTTTCTTCTCCTTCTAATTCTTCTCTGAACATGTTTCTGTTTCGTGACTACCTTAACTCTGCTTCTAACCCATCTTTGGTTACTTCTGCTCAGCAACTTTACAACCCCGTGAACAATATCACATGTTCATGTTCTTCGTCTTCCGCGCCTCCTTCTAATTCTGTCCCAGGTTGCTGTGTCGTGAATTCTGCTGGCGGCGTTATGGAGGATGCCAAAATTACTGAAGCTGATGACGAATCTGAATTCTTTCCCAGAGAGCATTCGGATTCTGGATTGTTGGAAGAGATAGTCCATAGGTTCTTACCAAAATCATCAAAGCCCAACCAGCAGTCGGAGGTTCGAGTGAAAGAGGAGAATCTGTCTCTGCCAACACCACAGTTGCTTCCTCCTCAGCCAGTCTATAATGATCATGGCATGTTCACTTCCACCACTTCCCTGTGCTATGAAAGTCTTAGGAATAAGGAGGTGACCAAGGCTGAGGATTATAATAATGTGTCTTATGATCCCCAAGGTTTCCCCATGCAGCAATTTGACAGCTTTCAGAATGGATTCAGCACTGGACAAGGCTTGCCTCTCAGAAGCGACCACCTCCACTTGATGATGAACGAAGCAGGGTACTCCATCATGGGAGATATTTTCCAGTATCCAGAGCTTCTTAGTGAATTTGTAACTAGGATACAAAACGCTTAA 1158 0.4991 MEEALRRLNGLAPVPEPDQDSISDPSKKCPATSITKRTARENGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPPSATTEHLFPHFAFPKQSHNQMNKNLNPRNRPLGWPSSSSNPHVADFSSPSNSSLNMFLFRDYLNSASNPSLVTSAQQLYNPVNNITCSCSSSSAPPSNSVPGCCVVNSAGGVMEDAKITEADDESEFFPREHSDSGLLEEIVHRFLPKSSKPNQQSEVRVKEENLSLPTPQLLPPQPVYNDHGMFTSTTSLCYESLRNKEVTKAEDYNNVSYDPQGFPMQQFDSFQNGFSTGQGLPLRSDHLHLMMNEAGYSIMGDIFQYPELLSEFVTRIQNA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0993 385 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 210 - -
Lele54g0993 385 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Lele54g0993 385 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Lele54g0993 385 MobiDBLite consensus disorder prediction 259 273 - -
Lele54g0993 385 MobiDBLite consensus disorder prediction 259 289 - -
Lele54g0993 385 FunFam Ethylene-responsive transcription factor 2 46 105 - -
Lele54g0993 385 MobiDBLite consensus disorder prediction 1 34 - -
Lele54g0993 385 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Lele54g0993 385 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Lele54g0993 385 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Lele54g0993 385 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Lele54g0993 385 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Lele54g0993 385 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0993 Lele-ChrLele54 16159590 16160747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0993 45 259 AP2-EREBP Transcription Factor Family AT1G24590 46.544 1.08e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele54g0993 AP2 2.8e-12 CL0081