Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0977 ATGGCAGGGGCAGCCTCTGCTCTCTTCCTTCTTGACATCAAAGGCCGCGTTCTCATTTGGCGCGACTACCGTGGCGATGTCTCTGCCGCCGAGGCCGAGCGCTTCTTCACCAAGCTCATTGAAAAAGAGGGAGATCCGCAGTATCAAGATCCAGTTGTATATGATAATGGTGTGACCTACATGTTTATACAGCATAGCAACGTCTACCTTATGATAGCAGCCAGGAAAAACTGCAATGCCGCTAGCCTTCTTTTCTTCCTACATCGTATAGTTGATGTGTTTAAGCATTATTTTGAAGAATTGGAAGAGGAATCACTAAGGGATAACTTTGTTGTTGTGTACGAACTCCTTGATGAAATTATGGACTTTGGCTACCCTCAGTATACCGAGGCAAAGATTCTAAGTGAATTTATCAAGACTGATGCTTATAGAATGGAAGTTACACAGAGACCTCCTATGGCTGTAACTAATGCTGTGTCTTGGCGTAGTGAAGGCATAAATTACAAGAAAAATGAGGTTTTCTTGGATGTGGTGGAGAGTGTTAACATACTTGTCAATAGCAATGGGCAAATCATTAGGTCTGATGTTGTTGGAGCGCTGAAGATGAGAACAAATTTGAGTGGCATGCCTGAGTGTAAACTTGGCCTAAATGATAGAGTATTATTGGAGGCCCAAGGAAGGGCGACCAAGGGAAAGGCAATTGACTTGGAAGACATTAAATTTCATCAGTGTGTTCGCTTGGCCCGATTTGAAAATGATCGAACAATTTCCTTCATACCACCAGATGGATCATTTGATTTGATGACATATAGGCTCAGCACACAGGTTAAGCCTTTAATTTGGTTGGAAGCTCAGGTTGAAAGGCATTCAAAAAGCCGGATTGAGATTATGGTAAAAGCTAGGAGTCAATTCAAGGAACGTAGCACTGCCACAAACGTTGAGATTGAGTTGCCTGTACCTGCTGATGCAACCAATCCAAATGTTCGAACTTCAATGGGATCTGCATCATATGCCCCTGAAAAGGATGCATTGATCTGGAAAATAAGATCCTTTCCTGGAGGCAAGGAGTACATGTTAAGGGCAGAGTTTCGTCTTCCCAGCATAACAGCTGAGGAAGCAACTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAGATACCATATTTTACTGTTTCTGGGATACAGGTAAGATACCTGAAGATAATTGAGAAAAGTGGGTATCAGGCCCTTCCGTGGGTGAGATACATCACAATGGCTGGAGAGTACGAACTGAGGCTTATTTGA 1287 0.4305 MAGAASALFLLDIKGRVLIWRDYRGDVSAAEAERFFTKLIEKEGDPQYQDPVVYDNGVTYMFIQHSNVYLMIAARKNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTNLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWLEAQVERHSKSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSASYAPEKDALIWKIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0977 428 CDD AP1_Mu_N 6 145 - -
Lele54g0977 428 ProSiteProfiles Mu homology domain (MHD) profile. 170 426 IPR028565 -
Lele54g0977 428 PANTHER AP COMPLEX SUBUNIT MU 5 426 - -
Lele54g0977 428 PRINTS Clathrin coat assembly protein signature 161 189 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele54g0977 428 PRINTS Clathrin coat assembly protein signature 103 130 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele54g0977 428 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele54g0977 428 PRINTS Clathrin coat assembly protein signature 236 263 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele54g0977 428 PRINTS Clathrin coat assembly protein signature 305 320 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele54g0977 428 PRINTS Clathrin coat assembly protein signature 345 356 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele54g0977 428 Gene3D - 5 146 - -
Lele54g0977 428 FunFam AP-1 complex subunit mu-1 isoform 1 5 145 - -
Lele54g0977 428 PIRSF AP_complex_mu 144 428 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele54g0977 428 PIRSF AP_complex_mu 4 153 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele54g0977 428 Gene3D Mu homology domain, subdomain B 166 422 - -
Lele54g0977 428 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 159 426 IPR036168 -
Lele54g0977 428 CDD AP-1_Mu1_Cterm 156 426 - -
Lele54g0977 428 Pfam Clathrin adaptor complex small chain 7 131 IPR022775 -
Lele54g0977 428 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 159 179 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lele54g0977 428 Gene3D Mu homology domain, subdomain B 278 426 - -
Lele54g0977 428 SUPERFAMILY SNARE-like 6 141 IPR011012 -
Lele54g0977 428 Pfam Adaptor complexes medium subunit family 159 426 IPR028565 -
Lele54g0977 428 ProSitePatterns Clathrin adaptor complexes medium chain signature 2. 256 270 IPR018240 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0977 Lele-ChrLele54 16063069 16067152 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0977 54 16063069 16067152 Lele55g0479 55 3028221 3032085 hybridization
Lele54g0977 54 16063069 16067152 Lele56g0465 56 3421401 3430012 hybridization