Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0970 ATGAAGAAAGCAGTTCAATTAGTCTCTTTTCAATCCCTTGTTCTCTTTTCACTATTTATGCTACGAGAAACTGTAGTGGCAGATCCGAGAATAAAGACAGTGCAAATAATGTGTGGCAACCAAACAGAGCACAATATCACAAACTTTGTCTCAAATTTTGTTACAACCATGGATGATATCAGTGATCAGATGAGGAATCATGGGTATGGAACTGCAGTTTCAGGGACAGGTCCTGATACTAACTATGGTCTTGCTCAGTGCTACGGAGATCTTTCTTTACTTGACTGTGTTCTATGTTATGCCGAGGCACGCACGGTTCTTCCTAAGTGCTTCCCCAGCAATAGTGGTCGCATATACCTTGATGGTTGCTTTATGAGGGCTGAGAATTACAGCTTCTTTGAGGAGTATAGAGGAGAAGAAGACAGGGTTGTGTGTGGAAACACGACCAGAAAAAGCTTGAGTTTTCGAGCAGCAGCGAAGCAGGCGGTTCTGAGCGCGGTTGAAGCTGCAACTAATAATAAAGGGTATGCAAGACAGAAGGTTGCTGTATCAGGGACAACAAACGAGTCAGCTCATGTTCTGGCTAGTTGTTGGAGAAGTTTGAACATGAGTTCTTGTAAAGCTTGTCTTGAAGATGCTTCTTCTTCGATATTCGGATGTTTGCCCTCGTCAGAAGGAAGAGCTCTGAACACTGGCTGCTTCCTGAGGTATTCAGACACAGATTTTCTCAACAAGGAACTGGAACGTAAAAGTTCATCAGGTAATGTAATAGTGCTAGTGGTTGCAATTGTCAGTTCAGTGATCGTTTTCGTTGTTGCAATAGCCATTGGGGTTTATGTCTGGAAACAGAGATACATTCAAATGAAACGAAGAGGTTCGAATGATGTGGAGAAGTTAGCAAAGACCCTTCACCACAACAGTTTGAACTTCAAGTACTCGACCTTGGAGAGGGCAACCGACTCTTTCGATGTCGCGAACAAGCTCGGACAAGGAGGGTTTGGGACAGTGTACAAAGGAATTTTGGCTGATGGAAGAGAGATTGCAGTGAAGAGGTTATATTTTAACAACAGACATAGAGCAGAAGATTTCTATAATGAAATCAACATAATCAGCAGCGTGGAACATAAAAATCTAGTCAGATTATTAGGATGCAGTTGTTCAGGACCTGAAAGCCTTCTTGTATATGAGTATCTACCCAACAAGAGTCTTGATCGTTTCATTTTTGATAAAAACAGAGGAAAGGAACTAAACTGGGATAGGAGATATGAAATTGTCATTGGGACTGCTGAAGGATTAGTGTACCTACACGAGAAGTCCAAGATTAAGATAATTCACAGAGATATAAAAGCCAGTAACATCTTATTGGACACGAAGCTTCGAGCTAAAATCGCGGATTTCGGTTTGGCTAGGTCTTTCCAAGAGGACAAAAGCCACATCAGCACAGCTATTGCAGGAACTTTAGGGTATATGGCTCCAGAGTACCTGGCTCATGGTCAGTTAACAGAGAAAGCAGATGTATATAGTTTCGGCGCGCTACTTCTGGAAATAGTTACCGGGAGACAGAACAACAGAAGCAAAGCGGCAGAATATTCAGACAGCCTAATTACAGTGACATGGAAGCATTTCCAGTCAGGGACAGCAGAACAACTATTTGATCCGAATCTAATAACATCAGAAGAAAACAACAATGGCAATGTTAAAGATGAAATGTTAAGGGTGATGTACATAGGACTTCTATGCACTCAAGAGATGCCTTCATTGAGACCAACTATGGCAAAAGCATTAGAGATGCTAACAAAGGAGGAGGAGCAACTTCCTGCTCCCTCTAATCCACCCTTCATAGATGAAACCACAATGGAACTCCAAGATATATTTGATGATCCACTCTATCCTCTCAATGCCGCAGATTCAATTGCTACTATGTCCCACAGTGAATTTTGTCCCAGGTGA 1950 0.4205 MKKAVQLVSFQSLVLFSLFMLRETVVADPRIKTVQIMCGNQTEHNITNFVSNFVTTMDDISDQMRNHGYGTAVSGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPKCFPSNSGRIYLDGCFMRAENYSFFEEYRGEEDRVVCGNTTRKSLSFRAAAKQAVLSAVEAATNNKGYARQKVAVSGTTNESAHVLASCWRSLNMSSCKACLEDASSSIFGCLPSSEGRALNTGCFLRYSDTDFLNKELERKSSSGNVIVLVVAIVSSVIVFVVAIAIGVYVWKQRYIQMKRRGSNDVEKLAKTLHHNSLNFKYSTLERATDSFDVANKLGQGGFGTVYKGILADGREIAVKRLYFNNRHRAEDFYNEINIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDKNRGKELNWDRRYEIVIGTAEGLVYLHEKSKIKIIHRDIKASNILLDTKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGALLLEIVTGRQNNRSKAAEYSDSLITVTWKHFQSGTAEQLFDPNLITSEENNNGNVKDEMLRVMYIGLLCTQEMPSLRPTMAKALEMLTKEEEQLPAPSNPPFIDETTMELQDIFDDPLYPLNAADSIATMSHSEFCPR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0970 649 SUPERFAMILY Protein kinase-like (PK-like) 306 619 IPR011009 -
Lele54g0970 649 Gene3D Phosphorylase Kinase; domain 1 283 397 - -
Lele54g0970 649 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Lele54g0970 649 SMART serkin_6 322 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g0970 649 CDD STKc_IRAK 328 600 - -
Lele54g0970 649 Gene3D - 142 242 IPR038408 -
Lele54g0970 649 Gene3D - 30 132 IPR038408 -
Lele54g0970 649 FunFam Putative DUF26-domain receptor-like protein kinase family protein 284 397 - -
Lele54g0970 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Lele54g0970 649 FunFam Cysteine-rich receptor-like protein kinase 2 31 132 - -
Lele54g0970 649 ProSiteProfiles Gnk2-homologous domain profile. 138 242 IPR002902 -
Lele54g0970 649 Pfam Protein tyrosine and serine/threonine kinase 324 596 IPR001245 GO:0004672|GO:0006468
Lele54g0970 649 Pfam Salt stress response/antifungal 151 239 IPR002902 -
Lele54g0970 649 Pfam Salt stress response/antifungal 38 130 IPR002902 -
Lele54g0970 649 ProSiteProfiles Protein kinase domain profile. 322 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele54g0970 649 FunFam Cysteine-rich receptor-like protein kinase 3 141 242 - -
Lele54g0970 649 ProSiteProfiles Gnk2-homologous domain profile. 31 132 IPR002902 -
Lele54g0970 649 Gene3D Transferase(Phosphotransferase) domain 1 398 609 - -
Lele54g0970 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 619 - -
Lele54g0970 649 FunFam Cysteine-rich receptor-like protein kinase 2 398 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0970 Lele-ChrLele54 16028231 16031380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0970 13 649 Receptor kinase-like Gene Family AT1G70520 66.301 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele54g0970 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0970 54 16028231 16031380 Lele55g0486 55 3078542 3081647 hybridization
Lele54g0970 54 16028231 16031380 Lele56g0471 56 3459267 3465824 hybridization