Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0969 ATGGAAGAAATCTACGGAGCGCCTTTGTCGGCGGACTACTCTGACAAGGCCTTGATGGCGCCGGAGAACCTCATATTCGCCGCTGATTGCCATAGTTTTCTCCCGTCCTCCTCCGGCGGCTTCCACGATCGGAATCCGATGTTCGGATCCGACGACTTGCTTTCTGCCATTACCGAAGCTGAGCCGCCGTCTGTTGCCACCGAAATTCGACCTGAAGACGATGCCTCCTCTCTCATCAAAGCTAAAATCGCTTCTCATCCTCACTACCCTCGTCTCCTCCAAGCTTTCATCGATTGTCAGAAGGTTGGAGCGCCTCCAGAAATAGCGTGTCTGTTAGACGAAATCCAGCGAGAAAACGATGTTTGTGAGCGAGAGGTTGTTTCCACGTGCTTCGGTGACGATCCCGAGCTCGACGAGTTCATGGAAACCTATTGCGATCTTCTGATAAAGTATAAATCTGACCTTTCCGGGCCTTTTGACGAAGCAACTAATTTCCTCAACGAGATCGAAATCCAGCTCAGTCATCTCTGCTCTGGTGATTCCGTTCCAACTCTTTCCGATGATAGAGGCGTGTCTTCAGAAGAAGATATAAGAGCAGGAGATGGTGATGCACAAGCTGGGGGATTGCGTGGGGAAGATCGAGAGCTGAAGGATAGGCTCTTAAACAAGTTTGGGGGTCGGATTAGTAGTTTGAAATTTGAGTTCTCGAAGAAGAAGAAGAAGGGCAAGCTTCCCAAGGAAGCCAGGCAAACGCTCCTTGACTGGTGGAATGTTCACTACCAATGGCCTTATCCTACGGAAGCTGATAAGATAGCACTGGCAAAGTCAACGGGGCTACATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGGAAGCGCCACTGGAAACCGTCGGAGGATCTGCAGTTCTCTGTTACGGATACTCTAACCGGAGGCTTCTACTCCGATCATCGTAGATTCATTGCCTTGTGGGTTTTGGGGATAAGACGCAGGGTAGAAATGGCGCGCTTGCACTCCATTGTTGCTCCGTTCTCGTCGTTCCGGCCCTTAGCTTCTCCCCGTTTAAGATTCAGCCCAGTTCGATATGCCGCTGAACGCCAGGCCTTGTTTAATCGCATTGCTCCTGTCTATGATTACCTCAATGATTTGCTCAGCCTGGGTCAGCATCGCATTTGGAAGCGAATGGCGGTGTCTTGGAGTGGAGCGAAAATGGGAGACCGTGTATTGGATGTGTGCTGTGGAAGTGGGGATTTAACGTTTTTATTGTCTGAGAAAGTTGGGTCCGAAGGCGAGGTGACTGGTCTTGACTTCTCAAAGGAGCAATTGTTGATTGCTTCATCTCGGCAGAACATGCTTTCAAAGGAATACTTGAGTAATATTGAATGGGTTGAAGGTGATGCTCTTGACTTGCCATTTTCTGATGGTTCATTTGATGCTATAACTATGGGTTATGGTCTACGAAATGTGGTTGATAGGCGCAAGGCGATGCAAGAATTATTACGAGTCCTAAAAGCTGGCACCAGAGCGTCTATCCTTGACTTTAATAAGAGCGATCAGTTTCTGACTGCTTCAGCTATGGAATGGATGATTGACAACGTTGTTGTCCCTGTGGCCTCTGGTTATGGCCTCTACGAAGAGTATAGATATCTAAAAAGCTCAATCAGAGAGTTTTTGACAGGGAAGGAATTGGAGGAACTTGCTTTAGAAGTTGGTTTTTCTACTGCACGACATTATGAGATCCATGGAGGCTTTATGGGCTGTCTGGTAGCAAAGCGTTAG 1782 0.4776 MEEIYGAPLSADYSDKALMAPENLIFAADCHSFLPSSSGGFHDRNPMFGSDDLLSAITEAEPPSVATEIRPEDDASSLIKAKIASHPHYPRLLQAFIDCQKVGAPPEIACLLDEIQRENDVCEREVVSTCFGDDPELDEFMETYCDLLIKYKSDLSGPFDEATNFLNEIEIQLSHLCSGDSVPTLSDDRGVSSEEDIRAGDGDAQAGGLRGEDRELKDRLLNKFGGRISSLKFEFSKKKKKGKLPKEARQTLLDWWNVHYQWPYPTEADKIALAKSTGLHQKQINNWFINQRKRHWKPSEDLQFSVTDTLTGGFYSDHRRFIALWVLGIRRRVEMARLHSIVAPFSSFRPLASPRLRFSPVRYAAERQALFNRIAPVYDYLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDVCCGSGDLTFLLSEKVGSEGEVTGLDFSKEQLLIASSRQNMLSKEYLSNIEWVEGDALDLPFSDGSFDAITMGYGLRNVVDRRKAMQELLRVLKAGTRASILDFNKSDQFLTASAMEWMIDNVVVPVASGYGLYEEYRYLKSSIREFLTGKELEELALEVGFSTARHYEIHGGFMGCLVAKR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0969 593 Pfam ELK domain 215 236 IPR005539 GO:0003677
Lele54g0969 593 MobiDBLite consensus disorder prediction 185 209 - -
Lele54g0969 593 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
Lele54g0969 593 CDD AdoMet_MTases 408 507 - -
Lele54g0969 593 Hamap 2-phytyl-1,4-naphtoquinone methyltransferase [menG]. 366 593 IPR032904 GO:0042372|GO:0052624
Lele54g0969 593 MobiDBLite consensus disorder prediction 189 209 - -
Lele54g0969 593 SMART HOX_1 237 302 IPR001356 GO:0003677
Lele54g0969 593 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Lele54g0969 593 TIGRFAM MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 369 592 IPR004033 GO:0008168
Lele54g0969 593 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 303 - -
Lele54g0969 593 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 359 584 IPR029063 -
Lele54g0969 593 Gene3D - 234 305 - -
Lele54g0969 593 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Lele54g0969 593 Pfam KNOX1 domain 79 120 IPR005540 GO:0003677|GO:0005634
Lele54g0969 593 ProSitePatterns ubiE/COQ5 methyltransferase family signature 1. 378 393 IPR023576 GO:0008168
Lele54g0969 593 Gene3D Vaccinia Virus protein VP39 373 593 IPR029063 -
Lele54g0969 593 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
Lele54g0969 593 Pfam KNOX2 domain 131 177 IPR005541 GO:0003677|GO:0005634
Lele54g0969 593 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Lele54g0969 593 CDD homeodomain 249 299 IPR001356 GO:0003677
Lele54g0969 593 SUPERFAMILY Homeodomain-like 236 309 IPR009057 -
Lele54g0969 593 Hamap Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 358 593 IPR004033 GO:0008168
Lele54g0969 593 Pfam ubiE/COQ5 methyltransferase family 368 586 IPR004033 GO:0008168
Lele54g0969 593 SMART ELK_2 215 236 IPR005539 GO:0003677
Lele54g0969 593 ProSiteProfiles UbiE family SAM-binding methyltransferase profile. 362 593 IPR004033 GO:0008168
Lele54g0969 593 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0969 Lele-ChrLele54 16019110 16027335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0969 1 318 Homeobox Transcription Factor Family AT1G23380 62.727 3.43e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele54g0969 Ubie_methyltran 4.2e-55 CL0063