Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0968 ATGTTAGAAAATCTTTGTGAAAACCTTGACCGGCAAGACAATCACCCTCGAGGTGGAAAGCTCGGATACTATAGACAACGAAGATCCAAGATAAGGAAGGTTTCCCCCAGACCAGCAAAGGCTCATCTTTGCTGGGGTGGTATGCAGATCTTTGTCAAAACCTTGACGGGAAAGACTATCACTCTTGAGGTGGAAAGTTCCGATACGATCGATAATGTCAAAGCAAAGATCCAGGACAAGGAAGGTATCCCACCTGATCAGCAGCGTTTGATCTTCGCTGGAAAGCAATTGGAGGATGGTAGGACCCTTGCGGATTATAATATCCAGAAAGAGTCAACTCTTTATCTAGTGCTTCGTCTGCGTGGAGAAATGGTGGCTGTGGGAAACGTTGTGCTGTCGCTGCTTTGTATAACTGTTGTTGCTCTGATTGTTCTCTACACCGATCGTCTTGGTAACTTCAAGTCACCTTCCGCTAGGCAAGAGTTTATTGATGAAGTTGTTGCTTTCGCTCACAGTCACAGTGCTGGAGACTCTGGCCATTTGAATCTGTTACCCCAGGAAACTTCAACAGTTTTTAAAGAACCAATTGGGGTTGTGTATACTGAGGGTTCAACCAATACCAAGGCGTCTTCCGAAGATTTGGAATTGGTTGAATCAAGAGAACATGCATCTGCCAGGGTATTGTCAACTACAAGTGAGGAGGAGCAAGGTAAAACAGAGAATCTCATAAGAAAGGTAACAGATGGAATCAATCAAGAAACTAGAGCGGATGCAAGTGATGAAAATGTAAACGGTGAAGATGCATTAGAGGGCAATGCCATCAATGCATCTCAAAACATTGTTACTAAGCAAGAGGAACAAGCAACTGGAACTTCTAACGAAGCACCCAAGAATGCAAATGAGAGAATGAAGGCAATGGAGCAATCATTGATGAAAGGAAGCCAAATTCAAGACCAGGCTATGCGTACCATATCAGAAAGGCCGTTGTCCCCGCCAAAATTGCACCTTTGCTCATGGGAATGCGGAGCTGCGGCTATTCTCTGGCTCATATAG 1053 0.4454 MLENLCENLDRQDNHPRGGKLGYYRQRRSKIRKVSPRPAKAHLCWGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLYLVLRLRGEMVAVGNVVLSLLCITVVALIVLYTDRLGNFKSPSARQEFIDEVVAFAHSHSAGDSGHLNLLPQETSTVFKEPIGVVYTEGSTNTKASSEDLELVESREHASARVLSTTSEEEQGKTENLIRKVTDGINQETRADASDENVNGEDALEGNAINASQNIVTKQEEQATGTSNEAPKNANERMKAMEQSLMKGSQIQDQAMRTISERPLSPPKLHLCSWECGAAAILWLI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0968 350 MobiDBLite consensus disorder prediction 270 299 - -
Lele54g0968 350 FunFam Polyubiquitin 3 48 123 - -
Lele54g0968 350 SMART ubq_7 48 119 IPR000626 GO:0005515
Lele54g0968 350 Gene3D - 40 129 - -
Lele54g0968 350 SUPERFAMILY Ubiquitin-like 45 123 IPR029071 -
Lele54g0968 350 PANTHER UBIQUITIN 48 138 - -
Lele54g0968 350 PRINTS Ubiquitin signature 58 78 IPR019956 -
Lele54g0968 350 PRINTS Ubiquitin signature 100 121 IPR019956 -
Lele54g0968 350 PRINTS Ubiquitin signature 79 99 IPR019956 -
Lele54g0968 350 MobiDBLite consensus disorder prediction 1 20 - -
Lele54g0968 350 MobiDBLite consensus disorder prediction 219 238 - -
Lele54g0968 350 MobiDBLite consensus disorder prediction 1 21 - -
Lele54g0968 350 CDD Ubl_ubiquitin 48 122 - -
Lele54g0968 350 ProSitePatterns Ubiquitin domain signature. 74 99 IPR019954 -
Lele54g0968 350 ProSiteProfiles Ubiquitin domain profile. 48 123 IPR000626 GO:0005515
Lele54g0968 350 Pfam Ubiquitin family 50 121 IPR000626 GO:0005515
Lele54g0968 350 MobiDBLite consensus disorder prediction 271 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0968 Lele-ChrLele54 16011634 16013328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0968 48 133 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 87.209 9.68e-47 153