Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0960 ATGCCGAGGCCTTGGACTGGTAAAGCTCCATTGAAGAGCTCGAAGAAGAAAATCCCACTGTTTGATTCTTTCGATCCTCCCCCACCAGGAATGAAAGGAGTGAAGCATGTTGAAATGCCAGGGCCGTTTCCAGCTGGGACGTATCCACAGGAGGGGAAGACGAGGGAGAAGATACTTGGGGAGCCTTTGAAGAAGTGGGAAATAAGAATGCTTGTTAAACCCATGTTGGGTGAAAATCGCCAGGTTAATCTCGGAAGGGATGGATTAACACATAACATGTTGGAATTAATACATTCACATTGGAAGCGAGCTCGTGTTTGTAAAGTTCGTTGCAAAGGTGTCCCGACCGTAGATATGGATAACGTTTGCTATCATCTTGAGGAGAAAACTGGGGGTAAAATAATTCATCGAGTTGGTGGTGTAGTTTATCTTTTCCGTGGGAGAAATTACAACTATCGTACTCGTCCACAGTATCCATTGATGCTCTGGAAGCCAGCTGCTCCAGTTTACCCAAAACTTATCCAAGAAGTTCCGGAAGGATTAACAAAAGCTGAAGCTGACGAATTCCGTAAGAAAGGAAGAAAGCTATTACCTATATGTAAATTAGCTAAAAATGGAGTCTACGTTTCCCTTGTGAAAGATGTAAGACATGCTTTTGAAGGAAGTCCTTTGGTGAAAATTGACTGCAAGGGGTTGGAACCCAGTGATTACAAGAAAATAGGAGCCAAGCTTAAGGAATTGGTTCCTTGTGTGTTGTTGTCATTTGAGGATGAACAGATACTAATGTGGAGGGGGAGAGATTGGAAATCAATGTATCCTCAAGCTCCTCCAGTTTTAAGCCTTCCTGAAGTTGGTATTGCAAAGAACTTGGACAATTCAGGTGAGACCGAGGATGATCAAAATAAGGATGATAGAAACATGATGCCATCAAGCCCGAAAATGACATCGCTGTGGAAGCGAGCGATAGAGTCGAGCAAAGCACTGTGGTTGGATGAGATTATTGTTGATCCTGATGCTCTCTTGGAGAAGGTAGAGGAATTTGAGGTTGCTTCACAGGCCATTGAACACTCCTCGCCGGCACTCATATTTTCCAGTGAAGATGGTGATGCTGCTACTAAGGGCTCACTTGCAGACTTTGAAGAAGACAGCACTTATCCTAGTGATGGTTTTGCTACTGACGACGATGATCATCTGTATGACAACAGTGATGAGGATGAATCCAGTGCTGAGGCGGGTTCATCAGCCCTACCTGGATCATTACCTATTGATTTAATTGATGATAAGCTCAGAATAAGACAAGACAAATAA 1308 0.435 MPRPWTGKAPLKSSKKKIPLFDSFDPPPPGMKGVKHVEMPGPFPAGTYPQEGKTREKILGEPLKKWEIRMLVKPMLGENRQVNLGRDGLTHNMLELIHSHWKRARVCKVRCKGVPTVDMDNVCYHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKAEADEFRKKGRKLLPICKLAKNGVYVSLVKDVRHAFEGSPLVKIDCKGLEPSDYKKIGAKLKELVPCVLLSFEDEQILMWRGRDWKSMYPQAPPVLSLPEVGIAKNLDNSGETEDDQNKDDRNMMPSSPKMTSLWKRAIESSKALWLDEIIVDPDALLEKVEEFEVASQAIEHSSPALIFSSEDGDAATKGSLADFEEDSTYPSDGFATDDDDHLYDNSDEDESSAEAGSSALPGSLPIDLIDDKLRIRQDK 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0960 435 ProSiteProfiles CRM domain profile. 179 275 IPR001890 GO:0003723
Lele54g0960 435 SUPERFAMILY YhbY-like 62 156 IPR035920 -
Lele54g0960 435 MobiDBLite consensus disorder prediction 289 314 - -
Lele54g0960 435 FunFam CRS2-associated factor 1, chloroplastic 180 275 - -
Lele54g0960 435 MobiDBLite consensus disorder prediction 1 29 - -
Lele54g0960 435 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 1 423 IPR044599 GO:0000373
Lele54g0960 435 MobiDBLite consensus disorder prediction 292 306 - -
Lele54g0960 435 Gene3D - 62 158 IPR035920 -
Lele54g0960 435 Pfam CRS1 / YhbY (CRM) domain 181 264 IPR001890 GO:0003723
Lele54g0960 435 Pfam CRS1 / YhbY (CRM) domain 64 146 IPR001890 GO:0003723
Lele54g0960 435 SMART CRS1_YhbY_2 63 146 IPR001890 GO:0003723
Lele54g0960 435 SMART CRS1_YhbY_2 181 264 IPR001890 GO:0003723
Lele54g0960 435 Gene3D - 181 275 IPR035920 -
Lele54g0960 435 MobiDBLite consensus disorder prediction 376 421 - -
Lele54g0960 435 ProSiteProfiles CRM domain profile. 61 157 IPR001890 GO:0003723
Lele54g0960 435 SUPERFAMILY YhbY-like 181 272 IPR035920 -
Lele54g0960 435 FunFam CRS2-associated factor 1, chloroplastic 62 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0960 Lele-ChrLele54 15943020 15945807 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0960 54 15943020 15945807 Lele55g0015 55 131538 136985 hybridization
Lele54g0960 54 15943020 15945807 Lele56g0477 56 3537431 3545597 hybridization