Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0939 ATGAAAGGAGGAGAAGGGAAAGAGTACAAGAAGGGGCTGTGGACGGAGGAAGAAGACAGGGTTTTGATGGACTACGTTAGGGTTCATGGAAGACGCCACTGGAACCACATCTCCAAAGTCACTGGTTTGATGAGGGGTGGGAAGAGCTGCAGATTAAGGTGGCTGAACTATCTGAGCCCAAACGTGAAACATGGAAGTTTCTCTGAGGAAGAAGACGATCTCATCATCCGACTCCATAATCTTCTCGGAAACAGGTGGTCTCTAATAGCAGGAAGGATACCTGGAAGAACAGACAATCAAGTAAAGAATCATTGGAATGCTCATTTGTGCAAAAAAATTGGTATCACTAAGCAGATACCAAAATATATCAAGGTCAAGATATCTTCAGAACCTAGAACTTTACAATCAGAAGAGACTCATAATGTTTACATGTCTCCGAATTCTATGCCTATTGTTCCGCTCACTCAGAACAGGAAAGTTAAAGAAATTGAGATACATGGCCAAATAAGCTATGCCAACAACAATTCCATGGCAAATATTGGTGAAGCACAACACTGTTGGCCACCAACAGAAAATGATAACTTTGACCAAACTTTTATGTTGGATGATGATCATACTTTTATTCTACATAGTCCTCCTAGGTTAATGGAATTCCTTGATGGATTCGATATAATGTAG 678 0.4071 MKGGEGKEYKKGLWTEEEDRVLMDYVRVHGRRHWNHISKVTGLMRGGKSCRLRWLNYLSPNVKHGSFSEEEDDLIIRLHNLLGNRWSLIAGRIPGRTDNQVKNHWNAHLCKKIGITKQIPKYIKVKISSEPRTLQSEETHNVYMSPNSMPIVPLTQNRKVKEIEIHGQISYANNNSMANIGEAQHCWPPTENDNFDQTFMLDDDHTFILHSPPRLMEFLDGFDIM 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0939 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Lele54g0939 225 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 156 - -
Lele54g0939 225 SMART sant 10 60 IPR001005 -
Lele54g0939 225 SMART sant 63 111 IPR001005 -
Lele54g0939 225 CDD SANT 14 58 IPR001005 -
Lele54g0939 225 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Lele54g0939 225 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Lele54g0939 225 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Lele54g0939 225 CDD SANT 66 109 IPR001005 -
Lele54g0939 225 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Lele54g0939 225 Gene3D - 65 141 - -
Lele54g0939 225 FunFam Myb transcription factor 11 63 - -
Lele54g0939 225 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lele54g0939 225 Gene3D - 5 64 - -
Lele54g0939 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0939 Lele-ChrLele54 15830136 15832255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0939 2 222 MYB Transcription Factor Family AT5G40330 44.538 5.06e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele54g0939 Myb_DNA-binding 8.1e-13 CL0123