Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0924 ATGCCATATTCTGCAATGTCTTCTTGGGTTCACTCTCAAATTCTGCAGAATAATGGTGACATGGCTGGGCAGCCTATTCTTTCTCCATCTCCTCCTCCTCCTCCTCCATTGCCTTACATTTCTAACTTTCAGAAGCAAATAAGCCCACCTTCAGTTTCTTCATCTGGGAACAAAATAAGTCCAGCGGTTCTTTTCATCATAGTTGTTCTAGCTATTGTGTTTTTCATTTCGGGTCTCATTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTTCATCAATTTCTCAATCCAATAGATATCCAGATATGTCTGAATCAGATACTTACCAGAGGCAATTACAGCAACTGTTTCATCTGCATGATTCAGGACTGGATCAGGCTTTTATAGATGCTCTTCCTGTCTTCTTTTATAAGGAGATAATTGGCTTGAAAGAGCCATTTGATTGTGCCGTTTGCCTCTGTGAATTCTCAGATCTTGACAAGTTGAGGTTGCTGCCTATTTGCAACCATGCTTTTCACATTGACTGCATAGACACATGGTTGCTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTGTATGCACCAGGATTTCCTTTTGAAAACCCAGTTTTTGACTTTGAAGAGCCAAGAAGGGAAGATGATGGGGTTTCAGCAGGCATTGTTGGAGCTGATTCTGCTTCTGTTCACAAACATGCAGAGAATCACATTATGAGTGGAAGAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAGCTCAAATACAAGACAAGAAGTAGAAAAATGTGAAGGAGAGAGCAGTGCTAGTAGTAGTAATTTGGATGCGAGGAGATGTTATTCAATGGGGTCTTTCCAGTATGTGGTTGCTGATTCAGATTTAAGAGTAGCTTTATGCCCTAATAGGGGTGATGTGAGTAGTAGCAGTATGAGACAGTTGAAAGTGCGAGTAGCTCAAATTGGGAATAATCCTTCTGCTGATTCTGACTTTGAGGGCAAAAAACTCAACATTGCAAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGTTATGGTCTAAGAAGGATAAATTACCAAGTTCTTCAGTAACCCATATGGGAAATTCTGCTAATGTCACTGCAAATTCTCCCTGGATGAATAGAACTAGAGAATCAGAACCTGTTCTGCTCTTTCTTTATCACATGTATTTCCGGGAAAGATATATGCTTTGCAGAAACTATAAGCAAAAAAGAGAAAAAGGAAAAGTCATGGAGTGTAGTTTTGCACTAGATGATTTTTGA 1290 0.4 MPYSAMSSWVHSQILQNNGDMAGQPILSPSPPPPPPLPYISNFQKQISPPSVSSSGNKISPAVLFIIVVLAIVFFISGLIHLLVRFLIKHRSSSSISQSNRYPDMSESDTYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFSDLDKLRLLPICNHAFHIDCIDTWLLSNSTCPLCRGTLYAPGFPFENPVFDFEEPRREDDGVSAGIVGADSASVHKHAENHIMSGRRVFSVRLGKFRSSNTRQEVEKCEGESSASSSNLDARRCYSMGSFQYVVADSDLRVALCPNRGDVSSSSMRQLKVRVAQIGNNPSADSDFEGKKLNIARKGESFSVSKIWLWSKKDKLPSSSVTHMGNSANVTANSPWMNRTRESEPVLLFLYHMYFRERYMLCRNYKQKREKGKVMECSFALDDF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0924 429 Pfam Ring finger domain 150 193 IPR001841 -
Lele54g0924 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 54 353 - -
Lele54g0924 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 198 IPR013083 -
Lele54g0924 429 SMART ring_2 151 192 IPR001841 -
Lele54g0924 429 CDD RING-H2_PA-TM-RING 150 193 - -
Lele54g0924 429 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Lele54g0924 429 SUPERFAMILY RING/U-box 130 199 - -
Lele54g0924 429 FunFam RING-H2 finger protein ATL46 113 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0924 Lele-ChrLele54 15701206 15702746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0924 48 366 C3H Transcription Factor Family AT2G18650 41.143 1.76e-57 193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1067 49 6891500 6903570 Lele54g0924 54 15701206 15702746 CCT
Lele50g1155 50 7756382 7775005 Lele54g0924 54 15701206 15702746 CCT
Lele51g1081 51 6986263 6998566 Lele54g0924 54 15701206 15702746 CCT
Lele53g0943 53 19049987 19051536 Lele54g0924 54 15701206 15702746 ECH
Lele54g0924 54 15701206 15702746 Lele54g0924 54 15701206 15702746 ECH
Lele54g0924 54 15701206 15702746 Lele55g0530 55 3421353 3424640 hybridization
Lele54g0924 54 15701206 15702746 Lele56g0517 56 3782881 3784437 hybridization