Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0906 ATGATTCTTTACCGTTCCGCTTTGATGAGTACCGTCGTGGCGGTAGCAGATGCAAAAGGGAGAGACACATTCTTGGCGAAAGAAAATGTTTCGTGGAATTCACTTGGTCTGTCTGATGCCATTTCCCGAGCTCTGTCTAGCCCTGGCCTCGATAGGCTATCTCTGGTCCAGGCTTCTTCTATACCATCTGTGCTTTCTGGAAAGGACGTGGTTATTGCAGCAGAGACTGGTAGTGGTAAAACACACAGTTACCTAGTTCCTTTAATTGATAAGCTACGAGCTTCCAACGACAATTCTGAAGATACTGTCCATAATAAAAAAGAGTCTCTCTGTAAGATTCTGCTCGTTCTGTGTCCAAATGTACAACTCTGTGAACAAGTAGTTCAAATGGCTAACAGTATCTGTGGGGACGATGGTGCACCAATCGTTAGTGTGTCAGCCATTTGTGGCAGACAGGGATGGCCAATTCGTGAACCAGATATCATTATGACAACACCCGTTGCTCTTCTAAACTATGTTGAACAAAACAGAAATCGTCGAATGGAATTTATGCGTGGTGTTAAATATGTGGTAGATGAACTCATAAAAGCTGCAAGACAAGGTTACAGTCAAGATTTGGATAGTTTTGGGGGCAATTCTCGAAAACTGGTTTTTGCCAACACTTTTGAGGCTGTTGAAGCTGTGGCAAAGATATTGGTCAGATCTGGGATTGAATGTTTATGCTATCATAAGGATCGTTCCTTGGATGAGCTTGCTAAGGCGTTAGTCAAAGTCCGAGAGAAAGGTGGTGTTCTTGTATGCACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAACGTCTCACATGTTATCCAGGCAGATTTTGCTAGTTCTGCTGTAGACTTCTTGCATAGGGTTGGTAGAACTGGTCGAGCTGGTCAATTTGGCCTTGTTACTAGCATGTACACTGAATCTAACGGAGCTTGTTGA 969 0.4365 MILYRSALMSTVVAVADAKGRDTFLAKENVSWNSLGLSDAISRALSSPGLDRLSLVQASSIPSVLSGKDVVIAAETGSGKTHSYLVPLIDKLRASNDNSEDTVHNKKESLCKILLVLCPNVQLCEQVVQMANSICGDDGAPIVSVSAICGRQGWPIREPDIIMTTPVALLNYVEQNRNRRMEFMRGVKYVVDELIKAARQGYSQDLDSFGGNSRKLVFANTFEAVEAVAKILVRSGIECLCYHKDRSLDELAKALVKVREKGGVLVCTDAAARGVDIPNVSHVIQADFASSAVDFLHRVGRTGRAGQFGLVTSMYTESNGAC 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0906 322 Gene3D - 28 192 IPR027417 -
Lele54g0906 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 317 IPR027417 -
Lele54g0906 322 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 41 202 - -
Lele54g0906 322 SMART ultradead3 49 259 IPR014001 -
Lele54g0906 322 Pfam DEAD/DEAH box helicase 56 208 IPR011545 GO:0003676|GO:0005524
Lele54g0906 322 Gene3D - 193 321 IPR027417 -
Lele54g0906 322 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 240 IPR014001 -
Lele54g0906 322 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 190 322 IPR001650 -
Lele54g0906 322 SMART helicmild6 226 306 IPR001650 -
Lele54g0906 322 Pfam Helicase conserved C-terminal domain 213 306 IPR001650 -
Lele54g0906 322 CDD SF2_C_DEAD 216 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0906 Lele-ChrLele54 15578332 15581044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0906 206 314 Eukaryotic Initiation Factors Gene Family AT5G11170 33.636 2.93e-10 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0906 54 15578332 15581044 Lele49g1044 49 6718150 6720150 CCT
Lele54g0906 54 15578332 15581044 Lele50g1135 50 7525322 7527317 CCT
Lele54g0906 54 15578332 15581044 Lele51g1062 51 6835657 6837658 CCT
Lele54g0906 54 15578332 15581044 Lele52g1102 52 7470835 7472830 CCT
Lele54g0906 54 15578332 15581044 Lele55g0552 55 3567596 3571555 hybridization