Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0903 ATGGAAAGAGAATATGGCTCTGATATTTCTCCTTCATGGGATAGTGGTGAAAATGGCCATTCTTCTATAGAGAAGAGGCTAAGGTTATTTGGGTTTGAGCTGAACCCATCTCAGATCAACGAGGTCTGCGTCAAAGACTCTGTGGAAGGAGATGAAAGTATGAACTCTTCAAACTCAGTTTCATCAGGAGGTGAGAAAACTGAACAGCAGGAGAAGAGTTCATCTGCAACAAGAGACAACAACACACCATCAGATCATGAGAGGAAGTTCGAGTGCCAATATTGTTCAAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAAGCCAGGAGGGCTAGCTTAAGCTATTACCTTCAGCCTTTTCATAACAACCCTGGTGTTTCCTTCGACGGCTCTAATACGCCTTGGTTCTATGATCCCTTTTCTTATAATAAATCTGAGTTTTCTTTGTATGAAGAACCTCAGATTAGCTTCAAAACCAATGATCAAGATGCCATTAATATTCTTAATGGTTTTGATCAGAAATCAAATTCGAATTCTCATCCATCCCTTTCCCTTCCTTCTCAACAAGATACTTGTATGTTCACTTTATCACATACAGACCATAGGCCTTTCATCTTCCCTGCAGCTTCAAACCAGAGCCATAGTAATAAGGGTTTGGATCTTCAACTAGGCCTCACTCTGCAGTCAAATACACATATTTAG 756 0.4034 MEREYGSDISPSWDSGENGHSSIEKRLRLFGFELNPSQINEVCVKDSVEGDESMNSSNSVSSGGEKTEQQEKSSSATRDNNTPSDHERKFECQYCSKEFANSQALGGHQNAHKKERMKKKRLQLQARRASLSYYLQPFHNNPGVSFDGSNTPWFYDPFSYNKSEFSLYEEPQISFKTNDQDAINILNGFDQKSNSNSHPSLSLPSQQDTCMFTLSHTDHRPFIFPAASNQSHSNKGLDLQLGLTLQSNTHI 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0903 251 SUPERFAMILY beta-beta-alpha zinc fingers 86 117 IPR036236 -
Lele54g0903 251 PANTHER ZINC FINGER PROTEIN 5 20 246 IPR044299 GO:0010090
Lele54g0903 251 MobiDBLite consensus disorder prediction 50 80 - -
Lele54g0903 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Lele54g0903 251 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Lele54g0903 251 Pfam C2H2-type zinc finger 90 115 - -
Lele54g0903 251 MobiDBLite consensus disorder prediction 1 20 - -
Lele54g0903 251 Gene3D Classic Zinc Finger 63 136 - -
Lele54g0903 251 MobiDBLite consensus disorder prediction 44 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0903 Lele-ChrLele54 15558501 15559256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0903 88 179 C2H2 Transcription Factor Family AT1G10480 53.465 6.03e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele54g0903 zf-C2H2_6 2.7e-06 CL0361