Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0898 ATGGAGGTCTGTGATCTCTTGCCGTCAGATTCCGAGGAGGTTCATGTCTTGGCCGTCGATGACAGCCTCGTCGACCGGAAAGTCATCGAGCGCCTGCTCAGGATTTCAGCTTGTAAAGTCACTGCTGTGGACAGTGGAATAAGAGCTCTGCAATTCCTTGGACTCGAAGACCGGAAATCTCCTTCCGAATCGGACGGCTTTGATGGTTTAAAGGTGGATCTAATTATCACTGACTACTGCATGCCTGGAATGACCGGCTATGAATTACTCAAGAAAATCAAGGAATCGTCCACCTTGAGAGAAATTCCAGTGGTGATCATGTCGTCTGAAAACGTTTTGCCCCGAATAGACAGGTGTTTGGAAGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAGTTATCAGACGTGAAGCGGTTAAGGGATTACATGACGACAAGAGAAGTTAAGGCGGGAAGTCAGGAGAGAGAGGGTGAAAACGGCGTCAGGTTCACCAAAAGAAAGCTAACGGAATCCTCTGATATGGATTCATCGCCGCCGTCCGTTACCTCCTCGTCATCAGCTCTCTCATCATCATCGCCGTCGTCACCGTCGGATTCGGCTTCGCCATCCCCATCGCCGCCGTTGTCCCCTTCACCTTTATCGATTCTCCAATCAGACGGCTTAGAATGA 672 0.5 MEVCDLLPSDSEEVHVLAVDDSLVDRKVIERLLRISACKVTAVDSGIRALQFLGLEDRKSPSESDGFDGLKVDLIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLRDYMTTREVKAGSQEREGENGVRFTKRKLTESSDMDSSPPSVTSSSSALSSSSPSSPSDSASPSPSPPLSPSPLSILQSDGLE 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0898 223 Pfam Response regulator receiver domain 16 137 IPR001789 GO:0000160
Lele54g0898 223 MobiDBLite consensus disorder prediction 148 223 - -
Lele54g0898 223 CDD REC_typeA_ARR 16 140 - -
Lele54g0898 223 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 181 IPR045279 GO:0009736
Lele54g0898 223 SUPERFAMILY CheY-like 14 140 IPR011006 -
Lele54g0898 223 MobiDBLite consensus disorder prediction 174 199 - -
Lele54g0898 223 MobiDBLite consensus disorder prediction 148 173 - -
Lele54g0898 223 ProSiteProfiles Response regulatory domain profile. 15 145 IPR001789 GO:0000160
Lele54g0898 223 SMART REC_2 14 141 IPR001789 GO:0000160
Lele54g0898 223 Gene3D - 14 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0898 Lele-ChrLele54 15504165 15505186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0898 8 210 Response Regulator Gene Family AT1G59940 61.244 9.00e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele54g0898 Response_reg 3.3e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0913 53 18776423 18777482 Lele54g0898 54 15504165 15505186 ECH
Lele54g0898 54 15504165 15505186 Lele54g0898 54 15504165 15505186 ECH
Lele54g0898 54 15504165 15505186 Lele55g0562 55 3651483 3652538 hybridization
Lele54g0898 54 15504165 15505186 Lele56g0542 56 3980266 3981234 hybridization