Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0892 ATGCAAAATTTGCTTTTGTTCTCTCGTTCAGGATTTGGCTCTTCGAAGGATTTTGAATTTTATCCGAGTTGGATGCATGATTTGGTGTTGAAGAAGGCTGAGGCGAGGTTTTTTTTCGTGTTGGATATGAAGAGGTCCAGAGACGATGGTTATATGAGCTCTCAACTTAAACGGCACATGGCGTCTTCCCGAGGAGAAACATCGGGGCAGCCACAGATAATGGCTGGAGGTGCTCAAAAACTCACAACAAATGACGCCTTAGCATATCTGAAGGCAGTAAAGGAAATCTTTCAAGATAAAAGGGAAAAATATGATGAGTTTTTAGAAGTCATGAAGGATTTCAAGGCTCAAAGAGTTGATACTGTGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGTCACAGAGATCTAATTTTGGGATTTAACACCTTCTTGCCGAAGGGGTATGAAATCACACTTCCTTTGGAGGATGAACAACCTGTGCAAAAGAAGCCTGTTGAATTTGACGAAGCTATAAATTTTGTCAACAAAATTAAGTCTCGCTTTCAAGGTGATGACCATGTCTACAAGTCGTTTCTCGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTTCTGAGGTCTACCAAGAGGTTGCTTCACTTTTCCATGACCACCCAGATCTTCTTGATGAATTTGCTCACTTTCTTCCCGATACTTCAGCAACAGCATCTACACATTATGCTCCTTCTCGGAACTCTATACCTAGGAGCTCTGCAGTGCCAAGTCAAATGAGTGTTGAAAAGAGAGAACGGACTGTGGATTCTCATGGTGATCACGACCTCAGTGTTGATTGTTCTGATCCAGATCATGACAGAGTTATGATTAAGACAGAAAAGGATCAGAGGAGGCGTGCTGAGAAGGAGAAGGACCTCAGAGAAGAGAGGGATAGGAGAGATCTGGAACGGGATGATAGAAATTATGGGCCTGATGGTAGCCGAGACTTTACCCTGCCACGCTTCCCCCACAAACGGAAATCTGGTCGTAGGACAGATGACACTGGTGCTGAACCATTGCACGAAGGTGGCGATTCTGATGAAAATTTGAGCATGCTCCCTATGTTATCCACCTGTGATGACAAAAGTACTGTGAAGAGTATGTATAGTCAAGAGTTTGCTTTCTGTGAAAAAGTCAAGGAGAAGTTACGAAATTCTGATGTTTATCAGGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAAATAATTACCCGTCAAGAATTGGAATCCTTGGTGGGTGATTTACTGGGAAAATATCCAGACCTTATGGAAGGGTTTAATGAATTTTTGTCCAAATGTGAGAAGAATGATGGATTCCTTACTGGTGTAATGAATAAAAAGTCCTTTTGGAATGAAGGGATTGCATCTAAACCAGCAAAGGTGGAGGACAAGGATAGAGATAGAGCTCGAGATCATGATAGGGATGATCCAGTTAAAGAAAGAGATCATGAACTCCGAGAAAGGGACACATCTTCTGCTTTTATTAGCAAGGATGTTTCAGGTCCTAAGATGTATCCATATTCCAGCAAGGATAAGTATTACGGAAAACCTATAAATGAGTTAGACCTTTCTAACTGTGAGCAATGCACTCCCAGCTATCGTCTCCTACCAAAAAATTATCCGATACCCATGGCTAGCCAGAGAACCGAGCTTGGTGTTGAAGTATTGAATGATCATTGGGTTTCTGTTACTTCAGGAAGTGAAGATTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCCTGTTTAGATGCGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACGACAAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATGTTATTAAAGCAGATAGCCCTATTCGTATTGAGGACCACTTGACAGCTCTAAATCGGAGGTGCATTGAACGATTATATGGTGATCATGCACTTGATGTGATGGAGGTGTTGAGAAAGAATGCACCTCTAGCTTTACCTGTTATATTAAGCCGTTTGAAGCTGAAACAAGAAGAGTGGGCTAGGTGTCGTGCAGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAATTATCACAAATCTCTTGATCATCGCAGCTTCTACTTTAAGCAACAGGATACAAAAAGTTTGAGCACAAAAGCCTTGCTGGCTGAAATAAAAGAAATTAGTGAGAAGAAACACAAAGAAGATGATGTTCTTCTTGCAATTGCCGCTGGAAATAGACGACCTATTAATCCAAATTTGGAATTTGAGTATCCAGATCCAGATATTCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCAATGCTTGGTGTTCCTTCTGGACCCCAGGGTGATGAAGATAAAGAAGATGTCGTCAAGGCCAAGCATATTTCTGTCAAAGGTGGCACTGCAAGTTCTGGTGGCAGTGATGGTAGTCCTGGTGTAGCTGCAAATGTAACGAATTCAAGACAATTAAATACATCTGGAAATGGGGATGAAAGTATTTCATTAGAACAGTCAAATTCCAAGACTGAAACTTTGGATTATAGTAAACATCACGAGGGAACGCATACGAATTCATCCATGCCTGATGAGGTATTGGTGGCCAGTAAACAAGGTCATTCCAATGAACGGTTAGTGAATGCTAATGCCTTAATGGCTTCTGGAATGGAACAAATTAATGGGAGAACAAACATAGATAATGCATCAGGGCTTACTGCTACACCATCAAGACTTGGTAATGTTGCTGCTGAGGGAGGAAATTTTCCTTCGTCAGAGGTTGGTGATTCTACAAGACCAGCTACACCTACAAATGGGGCCATCACAGAAGGCAGCAAAGTTCACAGATACCAAGAACCTACTGGACACTTCAAAAGTGAAAGAGAAGAGGGCGAACTATCTCCTAATGGAGATTTTGAGGATAACTTTGCAGTATATGGAGATACTAGTTTAACAGCAGTAGGGCATAAAGGAAAGAAAGGTGGTGTGAGTATGCCATACCAAAATAGACGTGAAGAAGGTTGTGGTGAGGCAGCAGGAGAAAATGATGCTGATGTTGATGAAGGAGAAGGAAGTCCTCATAGGTCATCACAGGACAGTGAGAATGCTTCTGAAAATGGTCATGTTTTGGGAAGTGAGTCTGCCGATGGTGAGGAGTGTTGTCAAGAAGAGCATGAGGAGGATGAGGAGCATGGTAACAAGGTTGAGAGTGAGAGTGAAGCTGAAGGAATGGCTGATGCCAATGATGTGGAAGGCGATGTAATCTCATTGCCATTTTCGGAACGCTTTTTGCTATCTGTAAAGCCTTTGGCAAAGCATGTTCCCCCTATGTTGCACGAGAAAGAAAGGGTTTCTAGAGTTTTTTATGGAAATGATTCCTTTTATGTGCTTTTTAGGCTTCACCGAACACTGTATGAGAGGATACAATCAGCAAAGTTGAACTCATCATCTGCGGATAGGAAGTGGAGGGCTTCAAATGATGTAAACTCTAATGATCAATATGGCAGGTTCATGACTGCCCTTTACAAACTACTGGATGGTTCTTCTGACAACACAAAATTTGAGGATGACTGCCGAGCTATTATTGGAACTCAGTCATATGTGTTATTTACGTTAGACAAGTTGATATACAAGCTTGTTAAACAGCTGCAAGCAGTTGCTACTGATGAGATGGATAACAAGCTTCTCCAACTTCATTCATACGAGAAATCAAGAAAATCTGGAAGATTTTTTGATATAGTTTATTATGAAAATGCTCGAGTTCTTCTACATGATGAGATCATATACCGTATTGAATGTTCATCTACACCAACACGATTATCTATTCAATTGATGGACTATGGACATGATAAGCCTGAGGCAACTGCTGTGTCTATGGACCCTAACTTTTCAGCCTATTTGCACAATGACTTCCTTTCTGGTTTTCCTGAAAAAAAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGCAAGTATGACTGTAGTGATGAACTTTCAAACCAGGCCATGGAAGGATTACAAGTTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTTTCATACGTTTTAGATACAGAAGACTTTTTATTTCGAATGAGAAGGAAAAGGAAAGCTTTGCTTGAGAACAGATTATGTCATGAACGGACGAATTCTAAAAACTTGGATATGGTGTGTTCTCAAGCTAGTAATTTTATAAAACGAAGCACATATAATGGGAAACGCATTTATGGAGGTTGCCCCTGCAATCCAGTGACTTGTGCGAGCGACATTGACAGTGACCCCAGAAAAGAAGTGAATCACGTTGCAATGAGCAGAACAAGTCATACTCTTTCTGAGCTTGTGCTTGTTGAACACTCACATTTCAACACCGGCAGCAGCAAAAGTTAA 4509 0.4043 MQNLLLFSRSGFGSSKDFEFYPSWMHDLVLKKAEARFFFVLDMKRSRDDGYMSSQLKRHMASSRGETSGQPQIMAGGAQKLTTNDALAYLKAVKEIFQDKREKYDEFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPVQKKPVEFDEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLDEFAHFLPDTSATASTHYAPSRNSIPRSSAVPSQMSVEKRERTVDSHGDHDLSVDCSDPDHDRVMIKTEKDQRRRAEKEKDLREERDRRDLERDDRNYGPDGSRDFTLPRFPHKRKSGRRTDDTGAEPLHEGGDSDENLSMLPMLSTCDDKSTVKSMYSQEFAFCEKVKEKLRNSDVYQEFLKCLHIYSREIITRQELESLVGDLLGKYPDLMEGFNEFLSKCEKNDGFLTGVMNKKSFWNEGIASKPAKVEDKDRDRARDHDRDDPVKERDHELRERDTSSAFISKDVSGPKMYPYSSKDKYYGKPINELDLSNCEQCTPSYRLLPKNYPIPMASQRTELGVEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNVIKADSPIRIEDHLTALNRRCIERLYGDHALDVMEVLRKNAPLALPVILSRLKLKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRPINPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSGPQGDEDKEDVVKAKHISVKGGTASSGGSDGSPGVAANVTNSRQLNTSGNGDESISLEQSNSKTETLDYSKHHEGTHTNSSMPDEVLVASKQGHSNERLVNANALMASGMEQINGRTNIDNASGLTATPSRLGNVAAEGGNFPSSEVGDSTRPATPTNGAITEGSKVHRYQEPTGHFKSEREEGELSPNGDFEDNFAVYGDTSLTAVGHKGKKGGVSMPYQNRREEGCGEAAGENDADVDEGEGSPHRSSQDSENASENGHVLGSESADGEECCQEEHEEDEEHGNKVESESEAEGMADANDVEGDVISLPFSERFLLSVKPLAKHVPPMLHEKERVSRVFYGNDSFYVLFRLHRTLYERIQSAKLNSSSADRKWRASNDVNSNDQYGRFMTALYKLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLHSYEKSRKSGRFFDIVYYENARVLLHDEIIYRIECSSTPTRLSIQLMDYGHDKPEATAVSMDPNFSAYLHNDFLSGFPEKKKSGIFLKRNKRKYDCSDELSNQAMEGLQVINGLECKIACSSSKVSYVLDTEDFLFRMRRKRKALLENRLCHERTNSKNLDMVCSQASNFIKRSTYNGKRIYGGCPCNPVTCASDIDSDPRKEVNHVAMSRTSHTLSELVLVEHSHFNTGSSKS 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0892 1502 Gene3D Paired amphipathic helix 377 450 IPR036600 GO:0006355
Lele54g0892 1502 SMART hdac_interact2seq4b 540 640 IPR013194 -
Lele54g0892 1502 Gene3D Paired amphipathic helix 85 147 IPR036600 GO:0006355
Lele54g0892 1502 ProSiteProfiles PAH domain profile. 165 235 IPR003822 GO:0006355
Lele54g0892 1502 Gene3D Paired amphipathic helix 163 236 IPR036600 GO:0006355
Lele54g0892 1502 FunFam Paired amphipathic helix SIN3-like protein 164 235 - -
Lele54g0892 1502 MobiDBLite consensus disorder prediction 992 1011 - -
Lele54g0892 1502 MobiDBLite consensus disorder prediction 836 900 - -
Lele54g0892 1502 MobiDBLite consensus disorder prediction 961 981 - -
Lele54g0892 1502 MobiDBLite consensus disorder prediction 238 261 - -
Lele54g0892 1502 Pfam C-terminal domain of Sin3a protein 1158 1403 IPR031693 -
Lele54g0892 1502 MobiDBLite consensus disorder prediction 882 896 - -
Lele54g0892 1502 Coils Coil 291 320 - -
Lele54g0892 1502 FunFam Paired amphipathic helix protein Sin3 85 147 - -
Lele54g0892 1502 MobiDBLite consensus disorder prediction 263 359 - -
Lele54g0892 1502 MobiDBLite consensus disorder prediction 1023 1114 - -
Lele54g0892 1502 Coils Coil 613 633 - -
Lele54g0892 1502 MobiDBLite consensus disorder prediction 839 881 - -
Lele54g0892 1502 MobiDBLite consensus disorder prediction 475 507 - -
Lele54g0892 1502 MobiDBLite consensus disorder prediction 959 987 - -
Lele54g0892 1502 Pfam Sin3 family co-repressor 542 633 IPR013194 -
Lele54g0892 1502 FunFam Paired amphipathic helix protein SIN3 377 450 - -
Lele54g0892 1502 PANTHER SIN3B-RELATED 79 1302 IPR039774 GO:0003714
Lele54g0892 1502 ProSiteProfiles PAH domain profile. 79 149 IPR003822 GO:0006355
Lele54g0892 1502 ProSiteProfiles PAH domain profile. 379 448 IPR003822 GO:0006355
Lele54g0892 1502 SUPERFAMILY PAH2 domain 163 234 IPR036600 GO:0006355
Lele54g0892 1502 MobiDBLite consensus disorder prediction 238 367 - -
Lele54g0892 1502 SUPERFAMILY PAH2 domain 79 148 IPR036600 GO:0006355
Lele54g0892 1502 Pfam Paired amphipathic helix repeat 188 232 IPR003822 GO:0006355
Lele54g0892 1502 Pfam Paired amphipathic helix repeat 401 445 IPR003822 GO:0006355
Lele54g0892 1502 Pfam Paired amphipathic helix repeat 102 146 IPR003822 GO:0006355
Lele54g0892 1502 SUPERFAMILY PAH2 domain 382 449 IPR036600 GO:0006355
Lele54g0892 1502 MobiDBLite consensus disorder prediction 1097 1111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0892 Lele-ChrLele54 15448734 15457685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0892 70 162 WRKY Transcription Factor Family AT4G12020 58.947 2.07e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele54g0892 Sin3a_C 1.3e-57 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0892 54 15448734 15457685 Lele55g0571 55 3712720 3719840 hybridization
Lele54g0892 54 15448734 15457685 Lele56g0549 56 4038049 4047004 hybridization