Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0880 ATGCTGACTTATCGAATAGCAAGCACACTTACTCTTCAAGTTATTCGCCAGCGATGCGGGGTGGATGTTGACTGTTTGACTGAAACTTCATTGGCGGTTGCTGGTATGGATCCGGCGGCTATCAATATGATCAACGAGGGTTCGTTTGCGAATGGTAACGCCGATACGTCGTCGTATAATGTGGCGGAGATCTGGCAGTTCCCGATGAACGGCGGTGCCGGTCTCGGGGAGTCCGGAGGCGGGTTGGGCTTGAGGAGGCCGCAGTTCGGACAAAATTTGGGGCAGTTTGGCGATTTTACGTCGGGTCCGAACTCGAATGGCCCGGGTAATGATCCGAACTGTTCGGAACAGGGAGTGAATGGTGTCAATATGAAGAAGCGCGATTCTGAGGATGAATTTGCGAAAGGCGTCCCCACCGCCAATAAAGGTGGCATTGGCAATAGCAATGGCGTGAATGATGGTGATGGCAAACGGCTTAAAGTATCAGGGAATAGGAATGAGAGCCATGAAACTAAAGCTGAAACAGAAACCAGTTCAGAAATGCCAGCTTCTGAGCCTCCTAAGCCAGCTTACATCCATGCTAGGAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAGGAGCTGGTTCCTGGTTGTAACAAGGTTATTGGGAAAGCGTTGGTCCTCGATGAGATAATAAATTACATTCAGTCACTACAGCGCCAAGTTGAGTTCTTGTCAATGAAGCTTGAAGCTGTAAATTCAAGAGACCCTGGCTTTGAAATTTTTCCTCCTAAAGATTCTGGTCAACAAACATTTGACATGGCAATTGGTTCTCAAGCTCCGCGAGATCAGTTCAGCCGGGGTTCATCGCCAGAGTGGTTACACATGCAGTATTTCCTTCCTCCGCTTAAGACACATACTCAAGGTCCCAAGAAAACGGACACCTCATTCCCAATCCTTGCCCCGGACACGGCACTGTTAATGTCTTTCACAAGTTATAGTATATACAAGCGTCTCCATTTGCGGCCACGTTGGAATATTCATTCCCCGAATATGTAG 1044 0.4799 MLTYRIASTLTLQVIRQRCGVDVDCLTETSLAVAGMDPAAINMINEGSFANGNADTSSYNVAEIWQFPMNGGAGLGESGGGLGLRRPQFGQNLGQFGDFTSGPNSNGPGNDPNCSEQGVNGVNMKKRDSEDEFAKGVPTANKGGIGNSNGVNDGDGKRLKVSGNRNESHETKAETETSSEMPASEPPKPAYIHARREKISERMKILQELVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRDPGFEIFPPKDSGQQTFDMAIGSQAPRDQFSRGSSPEWLHMQYFLPPLKTHTQGPKKTDTSFPILAPDTALLMSFTSYSIYKRLHLRPRWNIHSPNM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0880 347 MobiDBLite consensus disorder prediction 89 188 - -
Lele54g0880 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 248 IPR036638 GO:0046983
Lele54g0880 347 Pfam Helix-loop-helix DNA-binding domain 195 234 IPR011598 GO:0046983
Lele54g0880 347 MobiDBLite consensus disorder prediction 158 176 - -
Lele54g0880 347 Gene3D - 193 251 IPR036638 GO:0046983
Lele54g0880 347 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 127 274 IPR024097 GO:0006355
Lele54g0880 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 233 IPR011598 GO:0046983
Lele54g0880 347 SMART finulus 189 239 IPR011598 GO:0046983
Lele54g0880 347 Coils Coil 230 250 - -
Lele54g0880 347 MobiDBLite consensus disorder prediction 93 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0880 Lele-ChrLele54 15358588 15361194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0880 36 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 39.763 1.68e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele54g0880 HLH 9.9e-05 No_clan