Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0865 ATGGGAGCTGGCGACTACTACAGGATCCTCAAGGTGAATCGTAATGCCACCGATGAGGAGCTCAAGAAGGCGTACAAGAGATTGGCTATGAAATGGCATCCAGATAAGAATCATCAACAATCTGTCAAGAAAGAGGACGCTGAGGCTAAATTCAAGCAGATATCTGAGGCTTATGATGTTCTCAGCGATCCCAAGAAGCGTCAGATCTATGATTTTTACGGTCATTATCCACTCAATTCTAATCGGGAAGACCGTAAGAATGAGGAAACTGGGAGCCAGAAGGACAAGAAGGTGGGGGCGATTGAGGCTAAATTGGCTTTTAGCCTCGAGGAACTTTACAAAGGTTGCAAAAGGAAGATGAAAGTCTCACGGAATGTTCCTGATGAATTTGGGAAGTTGTACACTGTTGAAGAAACCTTAAAGATTGATATTAAACCTGGCTGGAAGAAGGGCACAAAAATAACTTTTCCTGAGAAAGGCCACCAAGAACCAGGATGTGCACCAGCAGATCTAATCTTTGTGGTCGACGAGAAACCTCATGCGTTATTCAAGAGAGATGGAAATGACTTGGTTATCATCCAGAAGATATTACTTCTTGAGGCTCTCGTTGGAAAGACTCTGAACCTGAAAACATTGGATGGAAGAGACCTTACAATTCAAGTGAAGGATATTGTTGAACCAGGCTACGAGCTGGTGGTCCCAAATGAAGGGATGCCCATTTCAAAGGAACCAGGAAAGAAGGGGAAACTAAGAATTAAGTTTGATGTTATGTTTCCTTCAAGGCTGACCGCACAACAAAAGTATGAACTGAAAAGGATTCTGAGTGACGCTGATAACTAA 840 0.4298 MGAGDYYRILKVNRNATDEELKKAYKRLAMKWHPDKNHQQSVKKEDAEAKFKQISEAYDVLSDPKKRQIYDFYGHYPLNSNREDRKNEETGSQKDKKVGAIEAKLAFSLEELYKGCKRKMKVSRNVPDEFGKLYTVEETLKIDIKPGWKKGTKITFPEKGHQEPGCAPADLIFVVDEKPHALFKRDGNDLVIIQKILLLEALVGKTLNLKTLDGRDLTIQVKDIVEPGYELVVPNEGMPISKEPGKKGKLRIKFDVMFPSRLTAQQKYELKRILSDADN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0865 279 FunFam Dnaj homolog subfamily b member 96 178 - -
Lele54g0865 279 SMART dnaj_3 4 66 IPR001623 -
Lele54g0865 279 Gene3D - 99 178 - -
Lele54g0865 279 Gene3D DnaJ domain 2 98 IPR036869 -
Lele54g0865 279 Pfam DnaJ C terminal domain 101 259 IPR002939 -
Lele54g0865 279 CDD DnaJ_C 101 262 - -
Lele54g0865 279 SUPERFAMILY HSP40/DnaJ peptide-binding domain 102 180 IPR008971 GO:0006457|GO:0051082
Lele54g0865 279 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Lele54g0865 279 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Lele54g0865 279 SUPERFAMILY HSP40/DnaJ peptide-binding domain 183 267 IPR008971 GO:0006457|GO:0051082
Lele54g0865 279 SUPERFAMILY Chaperone J-domain 4 79 IPR036869 -
Lele54g0865 279 FunFam DnaJ-like subfamily B member 13 2 98 - -
Lele54g0865 279 Gene3D - 180 260 - -
Lele54g0865 279 CDD DnaJ 5 63 IPR001623 -
Lele54g0865 279 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 274 - -
Lele54g0865 279 Pfam DnaJ domain 5 71 IPR001623 -
Lele54g0865 279 FunFam DNAJ heat shock family protein 179 274 - -
Lele54g0865 279 PRINTS DnaJ domain signature 7 25 IPR001623 -
Lele54g0865 279 PRINTS DnaJ domain signature 25 40 IPR001623 -
Lele54g0865 279 PRINTS DnaJ domain signature 66 85 IPR001623 -
Lele54g0865 279 PRINTS DnaJ domain signature 46 66 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0865 Lele-ChrLele54 15269328 15271178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0865 6 73 C2H2 Transcription Factor Family AT1G74250 36.232 8.29e-10 57.4